Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03196 and MPMX19_03197 are separated by 363 nucleotides MPMX19_03197 and MPMX19_03198 overlap by 4 nucleotides MPMX19_03198 and MPMX19_03199 are separated by 4 nucleotides MPMX19_03199 and MPMX19_03200 are separated by 154 nucleotides
MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756
_03196
MPMX19_03197: MPMX19_03197 - hypothetical protein, at 493,120 to 493,443
_03197
MPMX19_03198: MPMX19_03198 - hypothetical protein, at 493,440 to 493,682
_03198
MPMX19_03199: MPMX19_03199 - hypothetical protein, at 493,687 to 494,049
_03199
MPMX19_03200: MPMX19_03200 - Transcriptional regulatory protein LiaR, at 494,204 to 494,851
_03200
Position (kb) 493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 492.488 kb on + strand, within MPMX19_03196 at 492.489 kb on - strand, within MPMX19_03196 at 492.816 kb on + strand at 492.816 kb on + strand at 492.984 kb on + strand at 493.119 kb on + strand at 493.120 kb on - strand at 493.120 kb on - strand at 493.155 kb on + strand, within MPMX19_03197 at 493.155 kb on + strand, within MPMX19_03197 at 493.156 kb on - strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.425 kb on - strand at 493.548 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.635 kb on - strand, within MPMX19_03198 at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.805 kb on + strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.806 kb on - strand, within MPMX19_03199 at 493.860 kb on + strand, within MPMX19_03199 at 493.860 kb on + strand, within MPMX19_03199 at 493.861 kb on - strand, within MPMX19_03199 at 493.861 kb on - strand, within MPMX19_03199 at 493.909 kb on + strand, within MPMX19_03199 at 493.909 kb on + strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.910 kb on - strand, within MPMX19_03199 at 493.977 kb on - strand, within MPMX19_03199 at 494.107 kb on - strand at 494.111 kb on - strand at 494.111 kb on - strand at 494.111 kb on - strand at 494.144 kb on + strand at 494.195 kb on + strand at 494.195 kb on + strand at 494.195 kb on + strand at 494.229 kb on + strand at 494.229 kb on + strand at 494.229 kb on + strand at 494.230 kb on - strand at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.449 kb on + strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.450 kb on - strand, within MPMX19_03200 at 494.455 kb on + strand, within MPMX19_03200 at 494.455 kb on + strand, within MPMX19_03200 at 494.456 kb on - strand, within MPMX19_03200 at 494.456 kb on - strand, within MPMX19_03200 at 494.456 kb on - strand, within MPMX19_03200 at 494.663 kb on - strand, within MPMX19_03200
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 492,488 + MPMX19_03196 0.64 +0.5 492,489 - MPMX19_03196 0.64 -2.3 492,816 + +1.1 492,816 + -0.5 492,984 + +1.1 493,119 + +0.8 493,120 - +0.4 493,120 - -0.9 493,155 + MPMX19_03197 0.11 -1.5 493,155 + MPMX19_03197 0.11 -0.5 493,156 - MPMX19_03197 0.11 -0.8 493,198 + MPMX19_03197 0.24 +0.4 493,198 + MPMX19_03197 0.24 -1.2 493,365 + MPMX19_03197 0.76 +1.1 493,365 + MPMX19_03197 0.76 -0.6 493,365 + MPMX19_03197 0.76 +0.1 493,365 + MPMX19_03197 0.76 -1.3 493,366 - MPMX19_03197 0.76 -0.5 493,366 - MPMX19_03197 0.76 -0.3 493,425 - +0.1 493,548 + MPMX19_03198 0.44 -0.3 493,583 + MPMX19_03198 0.59 +0.7 493,583 + MPMX19_03198 0.59 -1.6 493,584 - MPMX19_03198 0.59 -0.9 493,584 - MPMX19_03198 0.59 -1.2 493,584 - MPMX19_03198 0.59 -1.2 493,584 - MPMX19_03198 0.59 -1.7 493,584 - MPMX19_03198 0.59 -2.5 493,584 - MPMX19_03198 0.59 +0.5 493,584 - MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 +1.5 493,634 + MPMX19_03198 0.80 -0.9 493,634 + MPMX19_03198 0.80 -0.7 493,634 + MPMX19_03198 0.80 -1.9 493,634 + MPMX19_03198 0.80 -1.9 493,635 - MPMX19_03198 0.80 -0.2 493,694 + +0.4 493,694 + -1.2 493,694 + -0.5 493,694 + -0.1 493,694 + -0.1 493,694 + -1.9 493,694 + -1.2 493,694 + -1.2 493,694 + +0.4 493,695 - -1.9 493,695 - +0.7 493,695 - -0.5 493,695 - -2.5 493,695 - -1.0 493,695 - -1.1 493,705 + -1.2 493,705 + -1.1 493,705 + -0.9 493,705 + -0.6 493,705 + +0.1 493,705 + -0.6 493,705 + -0.2 493,705 + +1.1 493,705 + -0.5 493,705 + -0.9 493,705 + -0.9 493,706 - +0.1 493,706 - -0.3 493,706 - -0.8 493,706 - -1.7 493,707 + -2.5 493,707 + -1.5 493,707 + +0.1 493,707 + -0.5 493,707 + +0.2 493,707 + -0.2 493,707 + +0.5 493,707 + -0.1 493,707 + +2.4 493,708 - +0.1 493,708 - -2.2 493,708 - -1.3 493,708 - -0.3 493,708 - -0.1 493,708 - -0.5 493,708 - -1.1 493,708 - -1.2 493,708 - -1.8 493,805 + MPMX19_03199 0.33 -1.0 493,805 + MPMX19_03199 0.33 -1.2 493,805 + MPMX19_03199 0.33 +0.5 493,805 + MPMX19_03199 0.33 -1.5 493,805 + MPMX19_03199 0.33 +1.9 493,806 - MPMX19_03199 0.33 -0.8 493,806 - MPMX19_03199 0.33 -0.9 493,806 - MPMX19_03199 0.33 -1.1 493,806 - MPMX19_03199 0.33 -0.6 493,806 - MPMX19_03199 0.33 -2.2 493,806 - MPMX19_03199 0.33 -2.0 493,806 - MPMX19_03199 0.33 -0.9 493,806 - MPMX19_03199 0.33 +1.1 493,806 - MPMX19_03199 0.33 -1.3 493,860 + MPMX19_03199 0.48 -1.7 493,860 + MPMX19_03199 0.48 -1.2 493,861 - MPMX19_03199 0.48 +0.1 493,861 - MPMX19_03199 0.48 +0.5 493,909 + MPMX19_03199 0.61 -0.9 493,909 + MPMX19_03199 0.61 -1.7 493,910 - MPMX19_03199 0.61 -0.3 493,910 - MPMX19_03199 0.61 -0.8 493,910 - MPMX19_03199 0.61 +0.1 493,977 - MPMX19_03199 0.80 -2.7 494,107 - -1.1 494,111 - -1.2 494,111 - -1.2 494,111 - +0.1 494,144 + -2.5 494,195 + -0.5 494,195 + -1.5 494,195 + -0.9 494,229 + +0.1 494,229 + -0.5 494,229 + +0.6 494,230 - -2.2 494,449 + MPMX19_03200 0.38 -1.4 494,449 + MPMX19_03200 0.38 -1.4 494,449 + MPMX19_03200 0.38 -0.6 494,449 + MPMX19_03200 0.38 -1.0 494,449 + MPMX19_03200 0.38 +0.1 494,450 - MPMX19_03200 0.38 +1.7 494,450 - MPMX19_03200 0.38 -0.4 494,450 - MPMX19_03200 0.38 -0.9 494,450 - MPMX19_03200 0.38 +0.1 494,450 - MPMX19_03200 0.38 -0.5 494,450 - MPMX19_03200 0.38 -0.6 494,450 - MPMX19_03200 0.38 -0.7 494,450 - MPMX19_03200 0.38 -1.5 494,450 - MPMX19_03200 0.38 +0.2 494,450 - MPMX19_03200 0.38 -0.2 494,455 + MPMX19_03200 0.39 -2.0 494,455 + MPMX19_03200 0.39 -0.1 494,456 - MPMX19_03200 0.39 +1.1 494,456 - MPMX19_03200 0.39 -1.1 494,456 - MPMX19_03200 0.39 -1.2 494,663 - MPMX19_03200 0.71 +0.3
Or see this region's nucleotide sequence