Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03195

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03192 and MPMX19_03193 are separated by 87 nucleotidesMPMX19_03193 and MPMX19_03194 are separated by 49 nucleotidesMPMX19_03194 and MPMX19_03195 are separated by 278 nucleotidesMPMX19_03195 and MPMX19_03196 are separated by 68 nucleotides MPMX19_03192: MPMX19_03192 - hypothetical protein, at 490,592 to 490,789 _03192 MPMX19_03193: MPMX19_03193 - hypothetical protein, at 490,877 to 491,161 _03193 MPMX19_03194: MPMX19_03194 - hypothetical protein, at 491,211 to 491,366 _03194 MPMX19_03195: MPMX19_03195 - hypothetical protein, at 491,645 to 491,947 _03195 MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756 _03196 Position (kb) 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 490.778 kb on + strandat 490.778 kb on + strandat 490.778 kb on + strandat 490.779 kb on - strandat 490.810 kb on - strandat 491.014 kb on - strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.064 kb on + strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.065 kb on - strand, within MPMX19_03193at 491.123 kb on + strand, within MPMX19_03193at 491.123 kb on + strand, within MPMX19_03193at 491.212 kb on + strandat 491.213 kb on - strandat 491.275 kb on + strand, within MPMX19_03194at 491.275 kb on + strand, within MPMX19_03194at 491.275 kb on + strand, within MPMX19_03194at 491.399 kb on - strandat 491.455 kb on - strandat 491.498 kb on + strandat 491.498 kb on + strandat 491.498 kb on + strandat 491.499 kb on - strandat 491.524 kb on + strandat 491.598 kb on + strandat 491.599 kb on - strandat 491.681 kb on + strand, within MPMX19_03195at 491.681 kb on + strand, within MPMX19_03195at 491.682 kb on - strand, within MPMX19_03195at 491.682 kb on - strand, within MPMX19_03195at 491.961 kb on - strandat 491.972 kb on + strandat 491.972 kb on + strandat 491.972 kb on + strandat 491.982 kb on - strandat 491.982 kb on - strandat 492.040 kb on + strandat 492.040 kb on + strandat 492.040 kb on + strandat 492.041 kb on - strandat 492.041 kb on - strandat 492.041 kb on - strandat 492.196 kb on + strand, within MPMX19_03196at 492.196 kb on + strand, within MPMX19_03196at 492.196 kb on + strand, within MPMX19_03196at 492.196 kb on + strand, within MPMX19_03196at 492.197 kb on - strand, within MPMX19_03196at 492.197 kb on - strand, within MPMX19_03196at 492.488 kb on + strand, within MPMX19_03196at 492.489 kb on - strand, within MPMX19_03196at 492.816 kb on + strandat 492.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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490,778 + +0.5
490,778 + +0.4
490,778 + -0.7
490,779 - +0.1
490,810 - +0.3
491,014 - MPMX19_03193 0.48 -0.5
491,064 + MPMX19_03193 0.66 -0.5
491,064 + MPMX19_03193 0.66 -1.2
491,064 + MPMX19_03193 0.66 -1.0
491,064 + MPMX19_03193 0.66 -0.2
491,064 + MPMX19_03193 0.66 -0.5
491,064 + MPMX19_03193 0.66 -0.9
491,064 + MPMX19_03193 0.66 -1.7
491,064 + MPMX19_03193 0.66 -1.1
491,064 + MPMX19_03193 0.66 -0.2
491,064 + MPMX19_03193 0.66 -1.5
491,065 - MPMX19_03193 0.66 -0.4
491,065 - MPMX19_03193 0.66 -1.0
491,065 - MPMX19_03193 0.66 -0.7
491,065 - MPMX19_03193 0.66 -1.0
491,065 - MPMX19_03193 0.66 -3.3
491,065 - MPMX19_03193 0.66 +1.1
491,065 - MPMX19_03193 0.66 +0.5
491,065 - MPMX19_03193 0.66 -0.5
491,123 + MPMX19_03193 0.86 -1.9
491,123 + MPMX19_03193 0.86 -0.9
491,212 + -0.2
491,213 - -0.2
491,275 + MPMX19_03194 0.41 -0.6
491,275 + MPMX19_03194 0.41 -3.6
491,275 + MPMX19_03194 0.41 -1.3
491,399 - +0.1
491,455 - +1.7
491,498 + -0.5
491,498 + -2.1
491,498 + +0.1
491,499 - -0.7
491,524 + +0.4
491,598 + +0.8
491,599 - -1.0
491,681 + MPMX19_03195 0.12 -0.1
491,681 + MPMX19_03195 0.12 -0.9
491,682 - MPMX19_03195 0.12 -1.6
491,682 - MPMX19_03195 0.12 -0.9
491,961 - -0.5
491,972 + -1.0
491,972 + +2.1
491,972 + -1.9
491,982 - -0.2
491,982 - -1.1
492,040 + -1.6
492,040 + -0.5
492,040 + +1.1
492,041 - -2.1
492,041 - +0.9
492,041 - -0.5
492,196 + MPMX19_03196 0.24 -0.3
492,196 + MPMX19_03196 0.24 -0.9
492,196 + MPMX19_03196 0.24 +0.8
492,196 + MPMX19_03196 0.24 -2.2
492,197 - MPMX19_03196 0.24 -1.5
492,197 - MPMX19_03196 0.24 -2.0
492,488 + MPMX19_03196 0.64 +0.5
492,489 - MPMX19_03196 0.64 -2.3
492,816 + +1.1
492,816 + -0.5

Or see this region's nucleotide sequence