Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02873 and MPMX19_02874 are separated by 17 nucleotides MPMX19_02874 and MPMX19_02875 are separated by 264 nucleotides MPMX19_02875 and MPMX19_02876 are separated by 209 nucleotides
MPMX19_02873: MPMX19_02873 - Acetyl esterase, at 123,257 to 124,261
_02873
MPMX19_02874: MPMX19_02874 - HTH-type transcriptional regulator SutR, at 124,279 to 124,875
_02874
MPMX19_02875: MPMX19_02875 - hypothetical protein, at 125,140 to 125,502
_02875
MPMX19_02876: MPMX19_02876 - hypothetical protein, at 125,712 to 126,806
_02876
Position (kb) 125
126 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 124.289 kb on + strand at 124.289 kb on + strand at 124.289 kb on + strand at 124.289 kb on + strand at 124.289 kb on + strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.290 kb on - strand at 124.304 kb on + strand at 124.304 kb on + strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.305 kb on - strand at 124.495 kb on + strand, within MPMX19_02874 at 124.508 kb on + strand, within MPMX19_02874 at 124.508 kb on + strand, within MPMX19_02874 at 124.508 kb on + strand, within MPMX19_02874 at 124.508 kb on + strand, within MPMX19_02874 at 124.508 kb on + strand, within MPMX19_02874 at 124.509 kb on - strand, within MPMX19_02874 at 124.509 kb on - strand, within MPMX19_02874 at 124.509 kb on - strand, within MPMX19_02874 at 124.509 kb on - strand, within MPMX19_02874 at 125.065 kb on + strand at 125.065 kb on + strand at 125.065 kb on + strand at 125.336 kb on + strand, within MPMX19_02875 at 125.336 kb on + strand, within MPMX19_02875 at 125.336 kb on + strand, within MPMX19_02875 at 125.336 kb on + strand, within MPMX19_02875 at 125.337 kb on - strand, within MPMX19_02875 at 125.337 kb on - strand, within MPMX19_02875 at 125.337 kb on - strand, within MPMX19_02875 at 125.337 kb on - strand, within MPMX19_02875 at 125.409 kb on - strand, within MPMX19_02875 at 125.520 kb on + strand at 125.520 kb on + strand at 125.520 kb on + strand at 125.647 kb on + strand at 125.647 kb on + strand at 125.648 kb on - strand at 125.648 kb on - strand at 125.648 kb on - strand at 125.682 kb on + strand at 125.682 kb on + strand at 125.682 kb on + strand at 125.682 kb on + strand at 125.682 kb on + strand at 125.683 kb on - strand at 125.683 kb on - strand at 125.683 kb on - strand at 125.683 kb on - strand at 125.754 kb on - strand at 125.926 kb on - strand, within MPMX19_02876 at 126.060 kb on + strand, within MPMX19_02876 at 126.061 kb on - strand, within MPMX19_02876 at 126.175 kb on + strand, within MPMX19_02876 at 126.175 kb on + strand, within MPMX19_02876 at 126.175 kb on + strand, within MPMX19_02876 at 126.175 kb on + strand, within MPMX19_02876 at 126.175 kb on + strand, within MPMX19_02876 at 126.175 kb on + strand, within MPMX19_02876 at 126.176 kb on - strand, within MPMX19_02876 at 126.176 kb on - strand, within MPMX19_02876 at 126.176 kb on - strand, within MPMX19_02876 at 126.176 kb on - strand, within MPMX19_02876 at 126.176 kb on - strand, within MPMX19_02876 at 126.176 kb on - strand, within MPMX19_02876 at 126.202 kb on + strand, within MPMX19_02876 at 126.202 kb on + strand, within MPMX19_02876 at 126.203 kb on - strand, within MPMX19_02876
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 124,289 + +0.6 124,289 + -0.3 124,289 + -2.1 124,289 + -1.5 124,289 + +0.3 124,290 - -1.3 124,290 - -0.9 124,290 - +1.1 124,290 - -0.1 124,290 - -0.9 124,290 - -1.7 124,290 - +0.6 124,290 - -1.1 124,304 + +0.6 124,304 + +0.3 124,305 - +0.1 124,305 - +3.1 124,305 - -0.5 124,305 - +0.1 124,305 - +0.1 124,305 - +0.1 124,305 - +0.6 124,305 - -0.6 124,305 - +0.2 124,305 - +0.1 124,305 - +1.1 124,305 - -0.4 124,305 - +0.1 124,495 + MPMX19_02874 0.36 -0.9 124,508 + MPMX19_02874 0.38 -0.3 124,508 + MPMX19_02874 0.38 -1.1 124,508 + MPMX19_02874 0.38 -1.3 124,508 + MPMX19_02874 0.38 -0.3 124,508 + MPMX19_02874 0.38 -0.5 124,509 - MPMX19_02874 0.39 -0.9 124,509 - MPMX19_02874 0.39 -0.6 124,509 - MPMX19_02874 0.39 -1.7 124,509 - MPMX19_02874 0.39 +1.1 125,065 + +0.5 125,065 + -0.5 125,065 + +0.1 125,336 + MPMX19_02875 0.54 -1.9 125,336 + MPMX19_02875 0.54 +1.4 125,336 + MPMX19_02875 0.54 -1.7 125,336 + MPMX19_02875 0.54 +1.1 125,337 - MPMX19_02875 0.54 -0.7 125,337 - MPMX19_02875 0.54 -1.3 125,337 - MPMX19_02875 0.54 -1.5 125,337 - MPMX19_02875 0.54 -1.9 125,409 - MPMX19_02875 0.74 -1.8 125,520 + -0.5 125,520 + -1.0 125,520 + -0.3 125,647 + -1.9 125,647 + +0.3 125,648 - -0.2 125,648 - +1.1 125,648 - -0.9 125,682 + -0.8 125,682 + -1.3 125,682 + -0.5 125,682 + -1.3 125,682 + -0.5 125,683 - -0.9 125,683 - -0.9 125,683 - -0.3 125,683 - -0.7 125,754 - +0.3 125,926 - MPMX19_02876 0.20 -2.1 126,060 + MPMX19_02876 0.32 -0.4 126,061 - MPMX19_02876 0.32 -0.5 126,175 + MPMX19_02876 0.42 +1.1 126,175 + MPMX19_02876 0.42 -0.5 126,175 + MPMX19_02876 0.42 +0.5 126,175 + MPMX19_02876 0.42 -0.4 126,175 + MPMX19_02876 0.42 -1.9 126,175 + MPMX19_02876 0.42 -1.3 126,176 - MPMX19_02876 0.42 -2.4 126,176 - MPMX19_02876 0.42 -0.8 126,176 - MPMX19_02876 0.42 +0.4 126,176 - MPMX19_02876 0.42 +1.5 126,176 - MPMX19_02876 0.42 -1.3 126,176 - MPMX19_02876 0.42 -0.3 126,202 + MPMX19_02876 0.45 +0.4 126,202 + MPMX19_02876 0.45 -1.0 126,203 - MPMX19_02876 0.45 -0.7
Or see this region's nucleotide sequence