Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02102 and MPMX19_02103 are separated by 85 nucleotides MPMX19_02103 and MPMX19_02104 overlap by 1 nucleotides MPMX19_02104 and MPMX19_02105 are separated by 383 nucleotides
MPMX19_02102: MPMX19_02102 - ATP synthase gamma chain, at 2,199,678 to 2,200,562
_02102
MPMX19_02103: MPMX19_02103 - ATP synthase subunit alpha, at 2,200,648 to 2,202,177
_02103
MPMX19_02104: MPMX19_02104 - ATP synthase subunit delta, at 2,202,177 to 2,202,746
_02104
MPMX19_02105: MPMX19_02105 - hypothetical protein, at 2,203,130 to 2,203,525
_02105
Position (kb)
2200
2201
2202
2203 Strain fitness (log2 ratio)
-2
-1
0
1 at 2200.607 kb on - strand at 2200.607 kb on - strand at 2202.969 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.996 kb on - strand at 2202.996 kb on - strand at 2202.996 kb on - strand at 2202.996 kb on - strand at 2203.006 kb on + strand at 2203.006 kb on + strand at 2203.006 kb on + strand at 2203.006 kb on + strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 2,200,607 - +0.9 2,200,607 - -0.4 2,202,969 + -2.5 2,202,995 + -2.4 2,202,995 + +0.3 2,202,995 + -0.6 2,202,995 + -1.6 2,202,995 + -0.9 2,202,996 - -1.4 2,202,996 - -0.1 2,202,996 - -1.4 2,202,996 - +0.9 2,203,006 + +1.3 2,203,006 + -1.3 2,203,006 + -1.1 2,203,006 + -0.9 2,203,007 - -2.4 2,203,007 - -0.1 2,203,007 - -0.1 2,203,007 - -0.1 2,203,007 - -0.7 2,203,017 + -2.4
Or see this region's nucleotide sequence