Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01911

Experiment: NF_with_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with_fullN
1,995,513	-				+0.4
1,995,611	+				-0.3
1,995,611	+				+1.0
1,995,612	-				-0.3
1,995,612	-				+1.0
1,995,612	-				+0.3
1,995,668	+				-1.6
1,995,670	+				-1.3
1,995,670	+				+0.4
1,995,670	+				-0.9
1,995,670	+				-1.0
1,995,670	+				-1.3
1,995,670	+				-0.9
1,995,670	+				-0.0
1,995,670	+				-0.4
1,995,670	+				-0.8
1,995,670	+				-0.3
1,995,670	+				-1.1
1,995,670	+				+0.1
1,995,670	+				-1.0
1,995,670	+				-1.3
1,995,670	+				-0.5
1,995,670	+				-2.1
1,995,670	+				-0.0
1,995,670	+				-0.1
1,995,670	+				-2.0
1,995,670	+				+0.2
1,995,670	+				+0.4
1,995,670	+				-0.0
1,995,670	+				-1.3
1,995,670	+				-2.8
1,995,670	+				+1.6
1,995,670	+				-0.0
1,995,670	+				-0.4
1,995,670	+				-1.3
1,995,670	+				-1.8
1,995,670	+				-0.7
1,995,670	+				-1.6
1,995,670	+				-1.6
1,995,670	+				-0.6
1,995,670	+				-0.0
1,995,670	+				-0.3
1,995,670	+				-0.0
1,995,670	+				+0.3
1,995,670	+				+0.6
1,995,670	+				-0.9
1,995,670	+				-0.8
1,995,670	+				+1.4
1,995,670	+				-1.7
1,995,670	+				-0.7
1,995,670	+				-1.4
1,995,670	+				+1.5
1,995,670	+				+0.5
1,995,670	+				-2.3
1,995,671	-				-0.6
1,995,671	-				+1.0
1,995,671	-				+1.0
1,995,671	-				-1.2
1,995,671	-				-1.2
1,995,671	-				-1.8
1,995,671	-				-0.6
1,995,671	-				-0.7
1,995,671	-				-0.0
1,995,671	-				+0.4
1,995,671	-				-0.0
1,995,671	-				-1.0
1,995,671	-				-0.7
1,995,671	-				+0.4
1,995,671	-				-0.0
1,995,671	-				+0.3
1,995,671	-				-0.6
1,995,671	-				+0.2
1,995,671	-				-0.4
1,995,671	-				-0.6
1,995,671	-				-1.2
1,995,671	-				+0.3
1,995,671	-				-1.4
1,995,671	-				-1.4
1,995,671	-				-0.6
1,995,671	-				+0.1
1,995,671	-				-1.6
1,995,671	-				-0.3
1,995,671	-				-1.2
1,995,671	-				-0.6
1,995,671	-				+0.4
1,995,671	-				-1.8
1,995,671	-				+0.4
1,995,671	-				-0.6
1,995,671	-				-1.5
1,995,671	-				+0.6
1,995,671	-				+1.0
1,995,671	-				-0.8
1,995,671	-				+0.5
1,995,671	-				-2.6
1,995,671	-				-1.6
1,995,671	-				+0.7
1,995,671	-				-1.2
1,995,671	-				-0.2
1,995,671	-				+0.4
1,995,671	-				-1.3
1,995,671	-				-1.1
1,995,671	-				-0.0
1,995,671	-				+2.0
1,995,671	-				-0.0
1,995,671	-				-1.0
1,995,671	-				-1.0
1,995,671	-				-1.0
1,995,671	-				-1.0
1,995,739	+		MPMX19_01911	0.10	-0.6
1,995,739	+		MPMX19_01911	0.10	-0.0
1,995,739	+		MPMX19_01911	0.10	+0.8
1,995,739	+		MPMX19_01911	0.10	-1.6
1,995,739	+		MPMX19_01911	0.10	+0.3
1,995,739	+		MPMX19_01911	0.10	-2.4
1,995,739	+		MPMX19_01911	0.10	-0.6
1,995,739	+		MPMX19_01911	0.10	-0.0
1,995,739	+		MPMX19_01911	0.10	-1.0
1,995,739	+		MPMX19_01911	0.10	-0.3
1,995,739	+		MPMX19_01911	0.10	-1.0
1,995,739	+		MPMX19_01911	0.10	-0.3
1,995,740	-		MPMX19_01911	0.10	-0.0
1,995,740	-		MPMX19_01911	0.10	-1.7
1,995,740	-		MPMX19_01911	0.10	-0.0
1,995,740	-		MPMX19_01911	0.10	+0.5
1,995,740	-		MPMX19_01911	0.10	+0.6
1,995,740	-		MPMX19_01911	0.10	+0.4
1,995,740	-		MPMX19_01911	0.10	-1.0
1,995,740	-		MPMX19_01911	0.10	-1.6
1,995,853	+		MPMX19_01911	0.26	-1.3
1,995,853	+		MPMX19_01911	0.26	-0.0
1,995,853	+		MPMX19_01911	0.26	-1.0
1,995,853	+		MPMX19_01911	0.26	-1.2
1,995,854	-		MPMX19_01911	0.26	-0.7
1,995,854	-		MPMX19_01911	0.26	-0.0
1,995,854	-		MPMX19_01911	0.26	-0.0
1,995,854	-		MPMX19_01911	0.26	+0.2
1,995,854	-		MPMX19_01911	0.26	+0.3
1,995,854	-		MPMX19_01911	0.26	-1.3
1,995,949	+		MPMX19_01911	0.39	-0.0
1,995,949	+		MPMX19_01911	0.39	-0.0
1,995,949	+		MPMX19_01911	0.39	+1.0
1,995,949	+		MPMX19_01911	0.39	+1.0
1,995,949	+		MPMX19_01911	0.39	-1.0
1,995,949	+		MPMX19_01911	0.39	-1.6
1,995,949	+		MPMX19_01911	0.39	-0.3
1,995,950	-		MPMX19_01911	0.39	-0.8
1,995,950	-		MPMX19_01911	0.39	+0.3
1,995,950	-		MPMX19_01911	0.39	-1.7
1,995,950	-		MPMX19_01911	0.39	-0.4
1,995,950	-		MPMX19_01911	0.39	-0.3
1,995,964	+		MPMX19_01911	0.41	-0.9
1,995,965	-		MPMX19_01911	0.41	-0.6
1,995,965	-		MPMX19_01911	0.41	-0.0
1,995,965	-		MPMX19_01911	0.41	-0.7
1,996,102	+		MPMX19_01911	0.60	-0.0
1,996,102	+		MPMX19_01911	0.60	-1.1
1,996,102	+		MPMX19_01911	0.60	+0.4
1,996,102	+		MPMX19_01911	0.60	+0.7
1,996,102	+		MPMX19_01911	0.60	-1.7
1,996,102	+		MPMX19_01911	0.60	-1.6
1,996,102	+		MPMX19_01911	0.60	-0.8
1,996,102	+		MPMX19_01911	0.60	-0.7
1,996,102	+		MPMX19_01911	0.60	-0.8
1,996,102	+		MPMX19_01911	0.60	-2.2
1,996,102	+		MPMX19_01911	0.60	-0.3
1,996,102	+		MPMX19_01911	0.60	-1.6
1,996,103	-		MPMX19_01911	0.60	-0.6
1,996,103	-		MPMX19_01911	0.60	-0.0
1,996,103	-		MPMX19_01911	0.60	-2.8
1,996,103	-		MPMX19_01911	0.60	-0.6
1,996,103	-		MPMX19_01911	0.60	-1.2
1,996,103	-		MPMX19_01911	0.60	-1.2
1,996,103	-		MPMX19_01911	0.60	+0.8
1,996,234	+		MPMX19_01911	0.79	-0.4
1,996,234	+		MPMX19_01911	0.79	-0.6
1,996,234	+		MPMX19_01911	0.79	+0.7
1,996,234	+		MPMX19_01911	0.79	+0.4
1,996,234	+		MPMX19_01911	0.79	-1.3
1,996,234	+		MPMX19_01911	0.79	-0.5
1,996,234	+		MPMX19_01911	0.79	+1.0
1,996,234	+		MPMX19_01911	0.79	-0.1
1,996,235	-		MPMX19_01911	0.79	-0.5
1,996,235	-		MPMX19_01911	0.79	-0.0
1,996,235	-		MPMX19_01911	0.79	+0.6
1,996,235	-		MPMX19_01911	0.79	+0.3
1,996,235	-		MPMX19_01911	0.79	-0.0
1,996,235	-		MPMX19_01911	0.79	-0.3
1,996,291	+		MPMX19_01911	0.86	-1.0
1,996,291	+		MPMX19_01911	0.86	+1.4
1,996,291	+		MPMX19_01911	0.86	-1.6
1,996,291	+		MPMX19_01911	0.86	-0.7
1,996,291	+		MPMX19_01911	0.86	-0.8
1,996,291	+		MPMX19_01911	0.86	-1.0
1,996,291	+		MPMX19_01911	0.86	-1.3
1,996,291	+		MPMX19_01911	0.86	-0.0
1,996,291	+		MPMX19_01911	0.86	-1.3
1,996,291	+		MPMX19_01911	0.86	-1.8
1,996,292	-		MPMX19_01911	0.87	-1.7
1,996,292	-		MPMX19_01911	0.87	-2.0
1,996,292	-		MPMX19_01911	0.87	-1.5
1,996,292	-		MPMX19_01911	0.87	-0.0
1,996,309	+		MPMX19_01911	0.89	-1.3
1,996,309	+		MPMX19_01911	0.89	-2.3
1,996,309	+		MPMX19_01911	0.89	-1.2
1,996,309	+		MPMX19_01911	0.89	-1.6
1,996,309	+		MPMX19_01911	0.89	-0.9
1,996,309	+		MPMX19_01911	0.89	-0.9
1,996,309	+		MPMX19_01911	0.89	-0.1
1,996,309	+		MPMX19_01911	0.89	-0.4
1,996,310	-		MPMX19_01911	0.89	-0.8
1,996,310	-		MPMX19_01911	0.89	-2.5
1,996,310	-		MPMX19_01911	0.89	-0.0
1,996,358	+				-1.0
1,996,359	-				-1.0
1,996,388	+				+0.6
1,996,388	+				-0.8
1,996,388	+				-0.3
1,996,388	+				-0.0
1,996,388	+				-2.3
1,996,388	+				-1.0
1,996,389	-				-0.3
1,996,389	-				-0.9
1,996,389	-				-1.6
1,996,389	-				-0.6
1,996,389	-				+0.1
1,996,389	-				-0.0
1,996,389	-				-0.8
1,996,407	+				-2.7
1,996,407	+				-0.4
1,996,407	+				-1.0
1,996,407	+				-0.7
1,997,063	+		MPMX19_01912	0.45	-0.3
1,997,063	+		MPMX19_01912	0.45	-2.2
1,997,063	+		MPMX19_01912	0.45	-1.5
1,997,063	+		MPMX19_01912	0.45	-0.5
1,997,064	-		MPMX19_01912	0.45	-0.0
1,997,064	-		MPMX19_01912	0.45	-0.0
1,997,252	+		MPMX19_01912	0.61	-1.6
1,997,252	+		MPMX19_01912	0.61	-1.3
1,997,253	-		MPMX19_01912	0.61	+0.3
1,997,253	-		MPMX19_01912	0.61	-1.0
1,997,253	-		MPMX19_01912	0.61	+1.0