Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01374 and MPMX19_01375 overlap by 4 nucleotides MPMX19_01375 and MPMX19_01376 are separated by 15 nucleotides MPMX19_01376 and MPMX19_01377 are separated by 59 nucleotides
MPMX19_01374: MPMX19_01374 - hypothetical protein, at 1,431,403 to 1,431,714
_01374
MPMX19_01375: MPMX19_01375 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 1,431,711 to 1,432,607
_01375
MPMX19_01376: MPMX19_01376 - hypothetical protein, at 1,432,623 to 1,436,987
_01376
MPMX19_01377: MPMX19_01377 - Outer membrane protein assembly factor BamA, at 1,437,047 to 1,439,098
_01377
Position (kb) 1432
1433
1434
1435
1436
1437 Strain fitness (log2 ratio) -1
0
1
2
3 at 1432.136 kb on - strand, within MPMX19_01375 at 1432.482 kb on - strand, within MPMX19_01375 at 1432.482 kb on - strand, within MPMX19_01375 at 1432.482 kb on - strand, within MPMX19_01375 at 1432.482 kb on - strand, within MPMX19_01375 at 1432.639 kb on + strand at 1432.639 kb on + strand at 1432.639 kb on + strand at 1432.640 kb on - strand at 1432.766 kb on - strand at 1432.783 kb on + strand at 1432.783 kb on + strand at 1432.784 kb on - strand at 1432.784 kb on - strand at 1433.989 kb on + strand, within MPMX19_01376 at 1433.989 kb on + strand, within MPMX19_01376 at 1433.989 kb on + strand, within MPMX19_01376 at 1433.990 kb on - strand, within MPMX19_01376 at 1433.990 kb on - strand, within MPMX19_01376 at 1433.990 kb on - strand, within MPMX19_01376 at 1433.990 kb on - strand, within MPMX19_01376 at 1434.204 kb on - strand, within MPMX19_01376 at 1434.385 kb on + strand, within MPMX19_01376 at 1435.931 kb on - strand, within MPMX19_01376 at 1435.931 kb on - strand, within MPMX19_01376 at 1436.947 kb on - strand at 1436.947 kb on - strand at 1436.947 kb on - strand at 1437.006 kb on - strand at 1437.006 kb on - strand at 1437.006 kb on - strand at 1437.150 kb on + strand at 1437.150 kb on + strand at 1437.151 kb on - strand at 1437.153 kb on + strand at 1437.154 kb on - strand at 1437.154 kb on - strand at 1437.154 kb on - strand at 1437.216 kb on + strand at 1437.217 kb on - strand at 1437.387 kb on + strand, within MPMX19_01377 at 1437.387 kb on + strand, within MPMX19_01377 at 1437.388 kb on - strand, within MPMX19_01377 at 1437.466 kb on - strand, within MPMX19_01377 at 1437.466 kb on - strand, within MPMX19_01377 at 1437.489 kb on + strand, within MPMX19_01377 at 1437.489 kb on + strand, within MPMX19_01377 at 1437.490 kb on - strand, within MPMX19_01377 at 1437.490 kb on - strand, within MPMX19_01377 at 1437.490 kb on - strand, within MPMX19_01377 at 1437.490 kb on - strand, within MPMX19_01377 at 1437.492 kb on + strand, within MPMX19_01377 at 1437.492 kb on + strand, within MPMX19_01377 at 1437.493 kb on - strand, within MPMX19_01377 at 1437.493 kb on - strand, within MPMX19_01377 at 1437.660 kb on + strand, within MPMX19_01377 at 1437.661 kb on - strand, within MPMX19_01377 at 1437.661 kb on - strand, within MPMX19_01377 at 1437.708 kb on + strand, within MPMX19_01377 at 1437.708 kb on + strand, within MPMX19_01377 at 1437.708 kb on + strand, within MPMX19_01377 at 1437.709 kb on - strand, within MPMX19_01377 at 1437.777 kb on + strand, within MPMX19_01377 at 1437.778 kb on - strand, within MPMX19_01377
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 1,432,136 - MPMX19_01375 0.47 +0.5 1,432,482 - MPMX19_01375 0.86 -1.5 1,432,482 - MPMX19_01375 0.86 +0.2 1,432,482 - MPMX19_01375 0.86 +1.5 1,432,482 - MPMX19_01375 0.86 +0.3 1,432,639 + -1.0 1,432,639 + +0.0 1,432,639 + +2.0 1,432,640 - +1.0 1,432,766 - -0.5 1,432,783 + +1.0 1,432,783 + +1.0 1,432,784 - +2.0 1,432,784 - -1.0 1,433,989 + MPMX19_01376 0.31 +1.0 1,433,989 + MPMX19_01376 0.31 -0.3 1,433,989 + MPMX19_01376 0.31 +1.0 1,433,990 - MPMX19_01376 0.31 -0.5 1,433,990 - MPMX19_01376 0.31 +0.0 1,433,990 - MPMX19_01376 0.31 +0.0 1,433,990 - MPMX19_01376 0.31 -0.5 1,434,204 - MPMX19_01376 0.36 +1.0 1,434,385 + MPMX19_01376 0.40 -1.0 1,435,931 - MPMX19_01376 0.76 -0.5 1,435,931 - MPMX19_01376 0.76 -1.5 1,436,947 - +0.8 1,436,947 - +0.4 1,436,947 - -1.3 1,437,006 - +1.0 1,437,006 - -0.6 1,437,006 - -0.3 1,437,150 + +1.0 1,437,150 + +1.0 1,437,151 - -0.5 1,437,153 + +1.0 1,437,154 - +1.0 1,437,154 - +1.0 1,437,154 - +0.0 1,437,216 + +1.0 1,437,217 - +1.0 1,437,387 + MPMX19_01377 0.17 +1.0 1,437,387 + MPMX19_01377 0.17 +0.0 1,437,388 - MPMX19_01377 0.17 +0.0 1,437,466 - MPMX19_01377 0.20 -1.0 1,437,466 - MPMX19_01377 0.20 +1.0 1,437,489 + MPMX19_01377 0.22 -0.5 1,437,489 + MPMX19_01377 0.22 -0.5 1,437,490 - MPMX19_01377 0.22 +0.0 1,437,490 - MPMX19_01377 0.22 +1.0 1,437,490 - MPMX19_01377 0.22 +1.0 1,437,490 - MPMX19_01377 0.22 -0.5 1,437,492 + MPMX19_01377 0.22 +1.0 1,437,492 + MPMX19_01377 0.22 +0.0 1,437,493 - MPMX19_01377 0.22 +1.0 1,437,493 - MPMX19_01377 0.22 +1.0 1,437,660 + MPMX19_01377 0.30 +1.0 1,437,661 - MPMX19_01377 0.30 -1.0 1,437,661 - MPMX19_01377 0.30 -0.5 1,437,708 + MPMX19_01377 0.32 +1.0 1,437,708 + MPMX19_01377 0.32 +0.0 1,437,708 + MPMX19_01377 0.32 +2.0 1,437,709 - MPMX19_01377 0.32 +0.0 1,437,777 + MPMX19_01377 0.36 +3.0 1,437,778 - MPMX19_01377 0.36 +0.5
Or see this region's nucleotide sequence