Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01252

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01251 and MPMX19_01252 are separated by 173 nucleotidesMPMX19_01252 and MPMX19_01253 are separated by 39 nucleotides MPMX19_01251: MPMX19_01251 - Modulator of FtsH protease HflK, at 1,300,880 to 1,302,142 _01251 MPMX19_01252: MPMX19_01252 - Iron-sulfur cluster carrier protein, at 1,302,316 to 1,303,488 _01252 MPMX19_01253: MPMX19_01253 - Chaperone protein DnaK, at 1,303,528 to 1,304,778 _01253 Position (kb) 1302 1303 1304Strain fitness (log2 ratio) -2 -1 0 1 2at 1302.197 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.238 kb on - strandat 1302.240 kb on - strandat 1302.240 kb on - strandat 1302.240 kb on - strandat 1302.240 kb on - strandat 1302.240 kb on - strandat 1303.988 kb on + strand, within MPMX19_01253at 1303.988 kb on + strand, within MPMX19_01253at 1303.988 kb on + strand, within MPMX19_01253at 1303.988 kb on + strand, within MPMX19_01253at 1303.989 kb on - strand, within MPMX19_01253at 1303.989 kb on - strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.027 kb on + strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.028 kb on - strand, within MPMX19_01253at 1304.282 kb on + strand, within MPMX19_01253at 1304.282 kb on + strand, within MPMX19_01253at 1304.282 kb on + strand, within MPMX19_01253at 1304.282 kb on + strand, within MPMX19_01253at 1304.282 kb on + strand, within MPMX19_01253at 1304.282 kb on + strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253at 1304.283 kb on - strand, within MPMX19_01253

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,302,197 - +1.1
1,302,238 - -0.4
1,302,238 - +1.1
1,302,238 - +0.1
1,302,238 - -1.8
1,302,238 - +0.7
1,302,238 - -1.8
1,302,238 - +0.5
1,302,238 - +0.1
1,302,238 - +0.1
1,302,240 - -0.5
1,302,240 - -0.5
1,302,240 - -1.5
1,302,240 - +0.6
1,302,240 - +1.1
1,303,988 + MPMX19_01253 0.37 -0.5
1,303,988 + MPMX19_01253 0.37 -2.4
1,303,988 + MPMX19_01253 0.37 -0.9
1,303,988 + MPMX19_01253 0.37 -0.5
1,303,989 - MPMX19_01253 0.37 +0.3
1,303,989 - MPMX19_01253 0.37 -1.3
1,304,027 + MPMX19_01253 0.40 -0.7
1,304,027 + MPMX19_01253 0.40 -0.6
1,304,027 + MPMX19_01253 0.40 -1.9
1,304,027 + MPMX19_01253 0.40 -0.0
1,304,027 + MPMX19_01253 0.40 -0.4
1,304,027 + MPMX19_01253 0.40 +0.6
1,304,027 + MPMX19_01253 0.40 +1.3
1,304,027 + MPMX19_01253 0.40 +0.1
1,304,027 + MPMX19_01253 0.40 -1.5
1,304,027 + MPMX19_01253 0.40 +0.6
1,304,027 + MPMX19_01253 0.40 +1.1
1,304,028 - MPMX19_01253 0.40 +0.5
1,304,028 - MPMX19_01253 0.40 -1.5
1,304,028 - MPMX19_01253 0.40 -0.5
1,304,028 - MPMX19_01253 0.40 -1.3
1,304,028 - MPMX19_01253 0.40 -1.5
1,304,028 - MPMX19_01253 0.40 -1.3
1,304,028 - MPMX19_01253 0.40 -1.9
1,304,028 - MPMX19_01253 0.40 -0.5
1,304,028 - MPMX19_01253 0.40 +1.1
1,304,028 - MPMX19_01253 0.40 -0.5
1,304,028 - MPMX19_01253 0.40 -0.9
1,304,028 - MPMX19_01253 0.40 -1.5
1,304,028 - MPMX19_01253 0.40 -0.4
1,304,028 - MPMX19_01253 0.40 -1.1
1,304,028 - MPMX19_01253 0.40 -0.8
1,304,028 - MPMX19_01253 0.40 -0.0
1,304,028 - MPMX19_01253 0.40 +1.1
1,304,028 - MPMX19_01253 0.40 +0.8
1,304,028 - MPMX19_01253 0.40 -0.1
1,304,028 - MPMX19_01253 0.40 +2.6
1,304,028 - MPMX19_01253 0.40 -1.4
1,304,028 - MPMX19_01253 0.40 -2.3
1,304,028 - MPMX19_01253 0.40 +0.1
1,304,028 - MPMX19_01253 0.40 +0.1
1,304,028 - MPMX19_01253 0.40 +0.5
1,304,028 - MPMX19_01253 0.40 -0.1
1,304,282 + MPMX19_01253 0.60 -1.9
1,304,282 + MPMX19_01253 0.60 -0.9
1,304,282 + MPMX19_01253 0.60 -0.5
1,304,282 + MPMX19_01253 0.60 +0.1
1,304,282 + MPMX19_01253 0.60 +0.4
1,304,282 + MPMX19_01253 0.60 -0.8
1,304,283 - MPMX19_01253 0.60 -1.2
1,304,283 - MPMX19_01253 0.60 +0.1
1,304,283 - MPMX19_01253 0.60 -0.9
1,304,283 - MPMX19_01253 0.60 -0.1
1,304,283 - MPMX19_01253 0.60 +0.6
1,304,283 - MPMX19_01253 0.60 -0.8
1,304,283 - MPMX19_01253 0.60 -0.5
1,304,283 - MPMX19_01253 0.60 -0.2
1,304,283 - MPMX19_01253 0.60 -0.9

Or see this region's nucleotide sequence