Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00922 and MPMX19_00923 are separated by 42 nucleotides MPMX19_00923 and MPMX19_00924 overlap by 1 nucleotides MPMX19_00924 and MPMX19_00925 are separated by 174 nucleotides
MPMX19_00922: MPMX19_00922 - Isocitrate dehydrogenase [NADP], at 961,525 to 962,970
_00922
MPMX19_00923: MPMX19_00923 - hypothetical protein, at 963,013 to 963,564
_00923
MPMX19_00924: MPMX19_00924 - hypothetical protein, at 963,564 to 964,364
_00924
MPMX19_00925: MPMX19_00925 - hypothetical protein, at 964,539 to 964,907
_00925
Position (kb) 963
964 Strain fitness (log2 ratio) -2
-1
0
1
2 at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.992 kb on - strand at 962.992 kb on - strand at 963.106 kb on + strand, within MPMX19_00923 at 963.106 kb on + strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.436 kb on + strand, within MPMX19_00923 at 963.437 kb on - strand, within MPMX19_00923 at 963.437 kb on - strand, within MPMX19_00923 at 963.782 kb on + strand, within MPMX19_00924 at 964.152 kb on + strand, within MPMX19_00924 at 964.369 kb on - strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.381 kb on - strand at 964.381 kb on - strand at 964.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 962,991 + -1.9 962,991 + -1.5 962,991 + -0.8 962,991 + +0.2 962,991 + -0.4 962,992 - +0.6 962,992 - -0.8 963,106 + MPMX19_00923 0.17 -2.1 963,106 + MPMX19_00923 0.17 +0.1 963,107 - MPMX19_00923 0.17 -0.0 963,107 - MPMX19_00923 0.17 -1.8 963,107 - MPMX19_00923 0.17 -0.9 963,107 - MPMX19_00923 0.17 -1.5 963,107 - MPMX19_00923 0.17 +0.2 963,107 - MPMX19_00923 0.17 -1.3 963,107 - MPMX19_00923 0.17 -0.9 963,436 + MPMX19_00923 0.77 -1.3 963,437 - MPMX19_00923 0.77 -0.5 963,437 - MPMX19_00923 0.77 -0.9 963,782 + MPMX19_00924 0.27 +2.1 964,152 + MPMX19_00924 0.73 -0.3 964,369 - +0.1 964,380 + +0.6 964,380 + +0.6 964,380 + -0.2 964,380 + -1.8 964,380 + +0.6 964,380 + -0.7 964,380 + -1.3 964,381 - -1.3 964,381 - -1.5 964,381 - -1.3
Or see this region's nucleotide sequence