Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00787

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00786 and MPMX19_00787 are separated by 237 nucleotidesMPMX19_00787 and MPMX19_00788 are separated by 143 nucleotidesMPMX19_00788 and MPMX19_00789 are separated by 68 nucleotidesMPMX19_00789 and MPMX19_00790 are separated by 6 nucleotides MPMX19_00786: MPMX19_00786 - Adaptive-response sensory-kinase SasA, at 806,698 to 808,338 _00786 MPMX19_00787: MPMX19_00787 - Sensor histidine kinase RcsC, at 808,576 to 809,934 _00787 MPMX19_00788: MPMX19_00788 - Chemotaxis protein CheY, at 810,078 to 810,476 _00788 MPMX19_00789: MPMX19_00789 - hypothetical protein, at 810,545 to 810,823 _00789 MPMX19_00790: MPMX19_00790 - hypothetical protein, at 810,830 to 811,438 _00790 Position (kb) 808 809 810Strain fitness (log2 ratio) -3 -2 -1 0 1at 807.673 kb on + strand, within MPMX19_00786at 807.673 kb on + strand, within MPMX19_00786at 807.673 kb on + strand, within MPMX19_00786at 807.673 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.721 kb on + strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 807.722 kb on - strand, within MPMX19_00786at 808.037 kb on - strand, within MPMX19_00786at 808.052 kb on - strand, within MPMX19_00786at 808.067 kb on + strand, within MPMX19_00786at 808.067 kb on + strand, within MPMX19_00786at 808.067 kb on + strand, within MPMX19_00786at 808.067 kb on + strand, within MPMX19_00786at 808.068 kb on - strand, within MPMX19_00786at 808.068 kb on - strand, within MPMX19_00786at 808.068 kb on - strand, within MPMX19_00786at 808.096 kb on + strand, within MPMX19_00786at 808.096 kb on + strand, within MPMX19_00786at 808.096 kb on + strand, within MPMX19_00786at 808.097 kb on - strand, within MPMX19_00786at 808.097 kb on - strand, within MPMX19_00786at 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.414 kb on + strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.415 kb on - strandat 808.563 kb on + strandat 808.563 kb on + strandat 808.563 kb on + strandat 808.564 kb on - strandat 808.564 kb on - strandat 808.564 kb on - strandat 808.564 kb on - strandat 809.947 kb on + strandat 809.948 kb on - strandat 809.966 kb on + strandat 809.966 kb on + strandat 809.982 kb on + strandat 809.982 kb on + strandat 809.983 kb on - strandat 809.983 kb on - strandat 809.983 kb on - strandat 809.983 kb on - strandat 809.983 kb on - strandat 810.034 kb on + strandat 810.035 kb on - strandat 810.053 kb on - strandat 810.053 kb on - strandat 810.053 kb on - strandat 810.053 kb on - strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.078 kb on - strandat 810.078 kb on - strandat 810.093 kb on + strandat 810.094 kb on - strandat 810.094 kb on - strandat 810.094 kb on - strandat 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.831 kb on + strandat 810.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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807,673 + MPMX19_00786 0.59 -0.3
807,673 + MPMX19_00786 0.59 -0.7
807,673 + MPMX19_00786 0.59 +0.0
807,673 + MPMX19_00786 0.59 -1.0
807,721 + MPMX19_00786 0.62 -0.3
807,721 + MPMX19_00786 0.62 -2.1
807,721 + MPMX19_00786 0.62 -1.3
807,721 + MPMX19_00786 0.62 -1.5
807,721 + MPMX19_00786 0.62 -0.5
807,721 + MPMX19_00786 0.62 -1.0
807,721 + MPMX19_00786 0.62 +1.5
807,721 + MPMX19_00786 0.62 -2.7
807,721 + MPMX19_00786 0.62 +0.2
807,721 + MPMX19_00786 0.62 -0.5
807,721 + MPMX19_00786 0.62 -1.1
807,721 + MPMX19_00786 0.62 -0.5
807,721 + MPMX19_00786 0.62 -0.5
807,721 + MPMX19_00786 0.62 -1.5
807,721 + MPMX19_00786 0.62 -1.1
807,721 + MPMX19_00786 0.62 -0.3
807,721 + MPMX19_00786 0.62 -1.3
807,721 + MPMX19_00786 0.62 -2.1
807,722 - MPMX19_00786 0.62 +0.0
807,722 - MPMX19_00786 0.62 -0.5
807,722 - MPMX19_00786 0.62 +0.0
807,722 - MPMX19_00786 0.62 -1.3
807,722 - MPMX19_00786 0.62 -1.0
807,722 - MPMX19_00786 0.62 +0.0
807,722 - MPMX19_00786 0.62 -1.3
807,722 - MPMX19_00786 0.62 -1.8
807,722 - MPMX19_00786 0.62 -1.0
807,722 - MPMX19_00786 0.62 -0.5
807,722 - MPMX19_00786 0.62 -1.0
807,722 - MPMX19_00786 0.62 -1.2
807,722 - MPMX19_00786 0.62 -0.4
807,722 - MPMX19_00786 0.62 -0.2
807,722 - MPMX19_00786 0.62 -1.0
807,722 - MPMX19_00786 0.62 -1.8
807,722 - MPMX19_00786 0.62 -0.5
807,722 - MPMX19_00786 0.62 -1.3
807,722 - MPMX19_00786 0.62 -1.2
807,722 - MPMX19_00786 0.62 +1.0
807,722 - MPMX19_00786 0.62 -0.2
808,037 - MPMX19_00786 0.82 -0.5
808,052 - MPMX19_00786 0.83 -1.3
808,067 + MPMX19_00786 0.83 -2.1
808,067 + MPMX19_00786 0.83 -0.3
808,067 + MPMX19_00786 0.83 -0.5
808,067 + MPMX19_00786 0.83 -0.3
808,068 - MPMX19_00786 0.83 -0.4
808,068 - MPMX19_00786 0.83 -2.5
808,068 - MPMX19_00786 0.83 +0.7
808,096 + MPMX19_00786 0.85 -1.3
808,096 + MPMX19_00786 0.85 +1.0
808,096 + MPMX19_00786 0.85 -1.7
808,097 - MPMX19_00786 0.85 -0.8
808,097 - MPMX19_00786 0.85 -0.5
808,414 + -1.4
808,414 + -1.3
808,414 + -1.0
808,414 + -2.8
808,414 + -1.1
808,414 + -0.5
808,414 + -0.4
808,414 + -0.7
808,414 + +0.3
808,414 + +0.2
808,414 + -0.3
808,414 + -0.5
808,414 + -0.5
808,415 - -0.5
808,415 - +0.7
808,415 - +1.0
808,415 - +0.6
808,415 - -0.3
808,415 - -1.0
808,415 - -1.0
808,415 - -2.0
808,563 + -0.5
808,563 + -2.2
808,563 + +1.0
808,564 - -0.9
808,564 - +0.5
808,564 - -1.4
808,564 - -0.5
809,947 + +0.0
809,948 - -1.4
809,966 + -1.0
809,966 + -1.0
809,982 + -1.5
809,982 + -1.0
809,983 - -0.8
809,983 - -2.0
809,983 - -1.0
809,983 - -0.7
809,983 - -2.3
810,034 + -0.2
810,035 - +1.5
810,053 - +0.0
810,053 - -1.3
810,053 - +0.1
810,053 - -0.4
810,077 + +0.5
810,077 + -0.7
810,077 + -0.8
810,077 + +0.4
810,077 + -0.8
810,078 - -0.2
810,078 - +0.0
810,093 + -1.7
810,094 - -0.7
810,094 - -0.3
810,094 - +0.0
810,216 + MPMX19_00788 0.35 -0.8
810,216 + MPMX19_00788 0.35 -1.0
810,216 + MPMX19_00788 0.35 -0.2
810,216 + MPMX19_00788 0.35 -1.3
810,216 + MPMX19_00788 0.35 -1.8
810,216 + MPMX19_00788 0.35 +0.0
810,216 + MPMX19_00788 0.35 -1.1
810,216 + MPMX19_00788 0.35 -2.4
810,216 + MPMX19_00788 0.35 -0.7
810,216 + MPMX19_00788 0.35 -0.3
810,216 + MPMX19_00788 0.35 -0.9
810,216 + MPMX19_00788 0.35 -1.3
810,217 - MPMX19_00788 0.35 +0.0
810,217 - MPMX19_00788 0.35 -0.4
810,217 - MPMX19_00788 0.35 -1.5
810,217 - MPMX19_00788 0.35 -1.3
810,217 - MPMX19_00788 0.35 +0.2
810,217 - MPMX19_00788 0.35 -1.5
810,217 - MPMX19_00788 0.35 +1.3
810,217 - MPMX19_00788 0.35 -2.0
810,217 - MPMX19_00788 0.35 -2.5
810,217 - MPMX19_00788 0.35 -0.6
810,217 - MPMX19_00788 0.35 -0.5
810,692 + MPMX19_00789 0.53 -1.5
810,692 + MPMX19_00789 0.53 +1.0
810,692 + MPMX19_00789 0.53 +0.4
810,692 + MPMX19_00789 0.53 +0.2
810,692 + MPMX19_00789 0.53 +0.0
810,692 + MPMX19_00789 0.53 -0.5
810,693 - MPMX19_00789 0.53 -2.3
810,693 - MPMX19_00789 0.53 -0.3
810,693 - MPMX19_00789 0.53 +0.5
810,693 - MPMX19_00789 0.53 +0.5
810,693 - MPMX19_00789 0.53 +0.0
810,693 - MPMX19_00789 0.53 -1.5
810,693 - MPMX19_00789 0.53 -1.1
810,693 - MPMX19_00789 0.53 -1.3
810,693 - MPMX19_00789 0.53 -1.3
810,693 - MPMX19_00789 0.53 -0.6
810,693 - MPMX19_00789 0.53 -0.4
810,693 - MPMX19_00789 0.53 -0.5
810,693 - MPMX19_00789 0.53 +0.0
810,693 - MPMX19_00789 0.53 -0.3
810,693 - MPMX19_00789 0.53 +0.5
810,701 + MPMX19_00789 0.56 -0.7
810,701 + MPMX19_00789 0.56 +1.0
810,701 + MPMX19_00789 0.56 -1.5
810,701 + MPMX19_00789 0.56 -0.1
810,701 + MPMX19_00789 0.56 -1.0
810,701 + MPMX19_00789 0.56 -0.9
810,701 + MPMX19_00789 0.56 -1.3
810,701 + MPMX19_00789 0.56 -1.3
810,701 + MPMX19_00789 0.56 -1.2
810,701 + MPMX19_00789 0.56 -2.0
810,701 + MPMX19_00789 0.56 -0.5
810,701 + MPMX19_00789 0.56 -2.7
810,701 + MPMX19_00789 0.56 -1.8
810,701 + MPMX19_00789 0.56 -1.0
810,702 - MPMX19_00789 0.56 -0.8
810,702 - MPMX19_00789 0.56 +0.6
810,702 - MPMX19_00789 0.56 -1.3
810,702 - MPMX19_00789 0.56 -0.8
810,702 - MPMX19_00789 0.56 -0.9
810,702 - MPMX19_00789 0.56 -0.3
810,702 - MPMX19_00789 0.56 +0.6
810,702 - MPMX19_00789 0.56 -1.0
810,702 - MPMX19_00789 0.56 -1.8
810,702 - MPMX19_00789 0.56 -1.3
810,702 - MPMX19_00789 0.56 -1.5
810,702 - MPMX19_00789 0.56 -3.0
810,702 - MPMX19_00789 0.56 +1.0
810,702 - MPMX19_00789 0.56 -1.4
810,704 + MPMX19_00789 0.57 -1.3
810,704 + MPMX19_00789 0.57 -0.5
810,704 + MPMX19_00789 0.57 -0.3
810,704 + MPMX19_00789 0.57 -0.4
810,704 + MPMX19_00789 0.57 -1.8
810,704 + MPMX19_00789 0.57 +0.0
810,704 + MPMX19_00789 0.57 -1.0
810,704 + MPMX19_00789 0.57 -1.0
810,705 - MPMX19_00789 0.57 -1.1
810,705 - MPMX19_00789 0.57 -0.2
810,705 - MPMX19_00789 0.57 +0.4
810,705 - MPMX19_00789 0.57 +0.5
810,705 - MPMX19_00789 0.57 -0.5
810,831 + -1.3
810,831 + +0.5

Or see this region's nucleotide sequence