Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00557

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00555 and MPMX19_00556 overlap by 4 nucleotidesMPMX19_00556 and MPMX19_00557 are separated by 94 nucleotidesMPMX19_00557 and MPMX19_00558 are separated by 78 nucleotidesMPMX19_00558 and MPMX19_00559 are separated by 12 nucleotides MPMX19_00555: MPMX19_00555 - ATP synthase subunit b, at 570,621 to 571,100 _00555 MPMX19_00556: MPMX19_00556 - ATP synthase subunit b, at 571,097 to 571,747 _00556 MPMX19_00557: MPMX19_00557 - ATP synthase subunit c, at 571,842 to 572,066 _00557 MPMX19_00558: MPMX19_00558 - ATP synthase subunit a, at 572,145 to 572,888 _00558 MPMX19_00559: MPMX19_00559 - hypothetical protein, at 572,901 to 573,269 _00559 Position (kb) 571 572 573Strain fitness (log2 ratio) -1 0 1at 572.120 kb on - strandat 572.120 kb on - strandat 572.120 kb on - strandat 572.147 kb on - strandat 572.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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572,120 - +0.4
572,120 - -1.6
572,120 - -1.6
572,147 - +0.7
572,147 - +0.0

Or see this region's nucleotide sequence