Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00450

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00448 and MPMX19_00449 are separated by 54 nucleotidesMPMX19_00449 and MPMX19_00450 are separated by 48 nucleotidesMPMX19_00450 and MPMX19_00451 are separated by 6 nucleotides MPMX19_00448: MPMX19_00448 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 447,487 to 448,251 _00448 MPMX19_00449: MPMX19_00449 - Phosphoribosylformylglycinamidine synthase subunit PurS, at 448,306 to 448,548 _00449 MPMX19_00450: MPMX19_00450 - hypothetical protein, at 448,597 to 449,229 _00450 MPMX19_00451: MPMX19_00451 - Putative lipid kinase BmrU, at 449,236 to 450,207 _00451 Position (kb) 448 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 447.652 kb on + strand, within MPMX19_00448at 447.652 kb on + strand, within MPMX19_00448at 447.652 kb on + strand, within MPMX19_00448at 447.844 kb on + strand, within MPMX19_00448at 447.844 kb on + strand, within MPMX19_00448at 447.844 kb on + strand, within MPMX19_00448at 447.844 kb on + strand, within MPMX19_00448at 447.847 kb on + strand, within MPMX19_00448at 447.847 kb on + strand, within MPMX19_00448at 447.847 kb on + strand, within MPMX19_00448at 447.847 kb on + strand, within MPMX19_00448at 447.847 kb on + strand, within MPMX19_00448at 447.847 kb on + strand, within MPMX19_00448at 447.848 kb on - strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.850 kb on + strand, within MPMX19_00448at 447.851 kb on - strand, within MPMX19_00448at 447.851 kb on - strand, within MPMX19_00448at 447.851 kb on - strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.967 kb on + strand, within MPMX19_00448at 447.968 kb on - strand, within MPMX19_00448at 447.968 kb on - strand, within MPMX19_00448at 447.968 kb on - strand, within MPMX19_00448at 448.171 kb on + strand, within MPMX19_00448at 448.171 kb on + strand, within MPMX19_00448at 448.171 kb on + strand, within MPMX19_00448at 448.171 kb on + strand, within MPMX19_00448at 448.172 kb on - strand, within MPMX19_00448at 448.287 kb on + strandat 448.525 kb on + strandat 448.525 kb on + strandat 448.526 kb on - strandat 448.526 kb on - strandat 448.526 kb on - strandat 448.865 kb on - strand, within MPMX19_00450at 448.865 kb on - strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.996 kb on + strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 448.997 kb on - strand, within MPMX19_00450at 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.173 kb on + strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.174 kb on - strandat 449.299 kb on + strandat 449.299 kb on + strandat 449.299 kb on + strandat 449.299 kb on + strandat 449.299 kb on + strandat 449.300 kb on - strandat 449.300 kb on - strandat 449.300 kb on - strandat 449.300 kb on - strandat 449.387 kb on + strand, within MPMX19_00451at 449.387 kb on + strand, within MPMX19_00451at 449.388 kb on - strand, within MPMX19_00451at 449.388 kb on - strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.432 kb on + strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.433 kb on - strand, within MPMX19_00451at 449.531 kb on + strand, within MPMX19_00451at 449.532 kb on - strand, within MPMX19_00451at 449.532 kb on - strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.648 kb on + strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451at 449.649 kb on - strand, within MPMX19_00451

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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447,652 + MPMX19_00448 0.22 -2.2
447,652 + MPMX19_00448 0.22 +0.0
447,652 + MPMX19_00448 0.22 -1.0
447,844 + MPMX19_00448 0.47 -0.6
447,844 + MPMX19_00448 0.47 -0.9
447,844 + MPMX19_00448 0.47 +0.6
447,844 + MPMX19_00448 0.47 -2.6
447,847 + MPMX19_00448 0.47 -0.3
447,847 + MPMX19_00448 0.47 +0.2
447,847 + MPMX19_00448 0.47 -2.3
447,847 + MPMX19_00448 0.47 +1.0
447,847 + MPMX19_00448 0.47 -0.0
447,847 + MPMX19_00448 0.47 -0.2
447,848 - MPMX19_00448 0.47 +1.0
447,850 + MPMX19_00448 0.47 -0.6
447,850 + MPMX19_00448 0.47 -0.8
447,850 + MPMX19_00448 0.47 -1.3
447,850 + MPMX19_00448 0.47 +2.2
447,850 + MPMX19_00448 0.47 -0.9
447,850 + MPMX19_00448 0.47 -1.7
447,850 + MPMX19_00448 0.47 -1.8
447,850 + MPMX19_00448 0.47 -0.6
447,850 + MPMX19_00448 0.47 -0.0
447,850 + MPMX19_00448 0.47 +0.2
447,850 + MPMX19_00448 0.47 -0.4
447,850 + MPMX19_00448 0.47 -0.8
447,850 + MPMX19_00448 0.47 -0.5
447,850 + MPMX19_00448 0.47 -1.6
447,850 + MPMX19_00448 0.47 -0.2
447,851 - MPMX19_00448 0.48 -0.6
447,851 - MPMX19_00448 0.48 +0.2
447,851 - MPMX19_00448 0.48 +1.0
447,967 + MPMX19_00448 0.63 -1.6
447,967 + MPMX19_00448 0.63 -1.8
447,967 + MPMX19_00448 0.63 -1.0
447,967 + MPMX19_00448 0.63 -0.3
447,967 + MPMX19_00448 0.63 -1.2
447,967 + MPMX19_00448 0.63 -0.6
447,967 + MPMX19_00448 0.63 +2.0
447,967 + MPMX19_00448 0.63 -0.6
447,967 + MPMX19_00448 0.63 -1.8
447,967 + MPMX19_00448 0.63 -2.0
447,967 + MPMX19_00448 0.63 -0.6
447,967 + MPMX19_00448 0.63 -1.0
447,968 - MPMX19_00448 0.63 -1.3
447,968 - MPMX19_00448 0.63 -0.8
447,968 - MPMX19_00448 0.63 -1.3
448,171 + MPMX19_00448 0.89 +0.7
448,171 + MPMX19_00448 0.89 -0.0
448,171 + MPMX19_00448 0.89 -0.3
448,171 + MPMX19_00448 0.89 -0.6
448,172 - MPMX19_00448 0.90 -1.8
448,287 + +0.2
448,525 + -0.0
448,525 + +0.7
448,526 - -0.0
448,526 - -0.3
448,526 - -0.6
448,865 - MPMX19_00450 0.42 +0.7
448,865 - MPMX19_00450 0.42 +0.3
448,996 + MPMX19_00450 0.63 +0.8
448,996 + MPMX19_00450 0.63 +1.6
448,996 + MPMX19_00450 0.63 +0.7
448,996 + MPMX19_00450 0.63 -1.0
448,996 + MPMX19_00450 0.63 -2.1
448,996 + MPMX19_00450 0.63 +2.6
448,996 + MPMX19_00450 0.63 -2.0
448,997 - MPMX19_00450 0.63 -0.7
448,997 - MPMX19_00450 0.63 -1.1
448,997 - MPMX19_00450 0.63 -0.0
448,997 - MPMX19_00450 0.63 -0.3
448,997 - MPMX19_00450 0.63 -0.5
448,997 - MPMX19_00450 0.63 -0.8
448,997 - MPMX19_00450 0.63 -0.6
448,997 - MPMX19_00450 0.63 +0.6
448,997 - MPMX19_00450 0.63 -0.2
448,997 - MPMX19_00450 0.63 -2.3
448,997 - MPMX19_00450 0.63 +1.4
448,997 - MPMX19_00450 0.63 -2.1
448,997 - MPMX19_00450 0.63 +0.3
448,997 - MPMX19_00450 0.63 -0.9
448,997 - MPMX19_00450 0.63 -0.3
449,173 + -0.5
449,173 + -0.2
449,173 + -0.0
449,173 + -1.8
449,173 + -1.3
449,173 + -2.0
449,173 + -1.0
449,173 + +1.2
449,173 + -0.2
449,173 + -0.6
449,173 + +0.1
449,173 + +0.1
449,173 + -0.3
449,173 + +0.7
449,173 + -0.1
449,173 + +2.3
449,173 + -0.7
449,173 + -1.3
449,173 + -1.8
449,173 + -0.6
449,173 + +0.4
449,173 + +1.0
449,173 + +1.0
449,173 + -0.8
449,173 + -0.0
449,173 + +0.6
449,173 + -0.9
449,173 + -0.3
449,174 - -1.8
449,174 - +0.5
449,174 - -1.1
449,174 - -0.0
449,174 - -2.5
449,174 - -0.7
449,174 - -0.6
449,174 - -0.5
449,174 - -1.0
449,174 - +1.1
449,174 - -0.1
449,174 - -1.3
449,174 - -0.6
449,174 - -0.6
449,174 - -0.8
449,174 - -0.8
449,299 + -0.0
449,299 + -1.8
449,299 + -1.0
449,299 + -1.7
449,299 + -0.9
449,300 - +1.8
449,300 - +0.2
449,300 - +0.5
449,300 - +0.4
449,387 + MPMX19_00451 0.16 -0.8
449,387 + MPMX19_00451 0.16 -2.8
449,388 - MPMX19_00451 0.16 -1.2
449,388 - MPMX19_00451 0.16 -0.9
449,432 + MPMX19_00451 0.20 +0.7
449,432 + MPMX19_00451 0.20 -0.3
449,432 + MPMX19_00451 0.20 -1.1
449,432 + MPMX19_00451 0.20 -0.3
449,432 + MPMX19_00451 0.20 -0.6
449,432 + MPMX19_00451 0.20 -0.8
449,432 + MPMX19_00451 0.20 -0.3
449,432 + MPMX19_00451 0.20 -1.0
449,433 - MPMX19_00451 0.20 -1.0
449,433 - MPMX19_00451 0.20 +0.6
449,433 - MPMX19_00451 0.20 +0.1
449,433 - MPMX19_00451 0.20 -0.6
449,433 - MPMX19_00451 0.20 -0.6
449,433 - MPMX19_00451 0.20 +0.8
449,433 - MPMX19_00451 0.20 -2.6
449,433 - MPMX19_00451 0.20 -0.0
449,433 - MPMX19_00451 0.20 -0.0
449,433 - MPMX19_00451 0.20 -1.3
449,433 - MPMX19_00451 0.20 -0.8
449,531 + MPMX19_00451 0.30 -2.2
449,532 - MPMX19_00451 0.30 -0.0
449,532 - MPMX19_00451 0.30 -1.3
449,648 + MPMX19_00451 0.42 -0.8
449,648 + MPMX19_00451 0.42 -0.8
449,648 + MPMX19_00451 0.42 +0.0
449,648 + MPMX19_00451 0.42 -0.3
449,648 + MPMX19_00451 0.42 -0.0
449,648 + MPMX19_00451 0.42 -1.0
449,648 + MPMX19_00451 0.42 -0.4
449,648 + MPMX19_00451 0.42 +0.6
449,648 + MPMX19_00451 0.42 -0.6
449,648 + MPMX19_00451 0.42 -0.0
449,648 + MPMX19_00451 0.42 -0.2
449,648 + MPMX19_00451 0.42 +0.1
449,648 + MPMX19_00451 0.42 -0.9
449,648 + MPMX19_00451 0.42 -1.0
449,649 - MPMX19_00451 0.42 -2.2
449,649 - MPMX19_00451 0.42 -1.2
449,649 - MPMX19_00451 0.42 -0.0
449,649 - MPMX19_00451 0.42 -1.0
449,649 - MPMX19_00451 0.42 -1.5
449,649 - MPMX19_00451 0.42 -0.9
449,649 - MPMX19_00451 0.42 -0.6
449,649 - MPMX19_00451 0.42 +1.6
449,649 - MPMX19_00451 0.42 -1.6
449,649 - MPMX19_00451 0.42 -0.3
449,649 - MPMX19_00451 0.42 +0.6
449,649 - MPMX19_00451 0.42 -0.4
449,649 - MPMX19_00451 0.42 -2.5
449,649 - MPMX19_00451 0.42 +0.6

Or see this region's nucleotide sequence