Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00148

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00146 and MPMX19_00147 are separated by 68 nucleotidesMPMX19_00147 and MPMX19_00148 are separated by 89 nucleotidesMPMX19_00148 and MPMX19_00149 overlap by 17 nucleotidesMPMX19_00149 and MPMX19_00150 are separated by 108 nucleotidesMPMX19_00150 and MPMX19_00151 overlap by 4 nucleotides MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883 _00146 MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698 _00147 MPMX19_00148: MPMX19_00148 - hypothetical protein, at 158,788 to 159,306 _00148 MPMX19_00149: MPMX19_00149 - hypothetical protein, at 159,290 to 159,763 _00149 MPMX19_00150: MPMX19_00150 - hypothetical protein, at 159,872 to 160,174 _00150 MPMX19_00151: MPMX19_00151 - Tyrosine recombinase XerC, at 160,171 to 161,118 _00151 Position (kb) 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 157.881 kb on + strandat 157.881 kb on + strandat 157.882 kb on - strandat 157.990 kb on - strandat 158.009 kb on + strandat 158.009 kb on + strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.030 kb on + strand, within MPMX19_00147at 158.123 kb on + strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.225 kb on + strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.352 kb on - strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.582 kb on + strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.731 kb on + strandat 158.731 kb on + strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.986 kb on + strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 159.344 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.710 kb on + strand, within MPMX19_00149at 159.710 kb on + strand, within MPMX19_00149at 159.711 kb on - strand, within MPMX19_00149at 159.713 kb on - strand, within MPMX19_00149at 159.723 kb on + strandat 159.723 kb on + strandat 159.778 kb on + strandat 159.778 kb on + strandat 159.779 kb on - strandat 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 160.039 kb on - strand, within MPMX19_00150at 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.288 kb on + strand, within MPMX19_00151at 160.288 kb on + strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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157,881 + -1.2
157,881 + -1.7
157,882 - +0.2
157,990 - -1.7
158,009 + -0.3
158,009 + -2.3
158,010 - -0.8
158,010 - -1.8
158,010 - -0.7
158,030 + MPMX19_00147 0.10 -0.7
158,123 + MPMX19_00147 0.23 -1.7
158,124 - MPMX19_00147 0.23 +0.6
158,124 - MPMX19_00147 0.23 -2.3
158,124 - MPMX19_00147 0.23 -1.4
158,124 - MPMX19_00147 0.23 -0.7
158,225 + MPMX19_00147 0.37 -0.4
158,226 - MPMX19_00147 0.37 -1.1
158,226 - MPMX19_00147 0.37 -0.7
158,226 - MPMX19_00147 0.37 +0.6
158,352 - MPMX19_00147 0.54 -2.4
158,420 + MPMX19_00147 0.63 -0.4
158,420 + MPMX19_00147 0.63 +0.7
158,420 + MPMX19_00147 0.63 -0.7
158,421 - MPMX19_00147 0.63 -0.1
158,421 - MPMX19_00147 0.63 -1.1
158,421 - MPMX19_00147 0.63 -1.4
158,478 - MPMX19_00147 0.70 -0.4
158,478 - MPMX19_00147 0.70 -0.7
158,478 - MPMX19_00147 0.70 -0.9
158,478 - MPMX19_00147 0.70 -1.3
158,478 - MPMX19_00147 0.70 -0.7
158,478 - MPMX19_00147 0.70 -1.7
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 -0.6
158,526 - MPMX19_00147 0.77 +0.6
158,526 - MPMX19_00147 0.77 -0.5
158,526 - MPMX19_00147 0.77 +0.9
158,526 - MPMX19_00147 0.77 -0.1
158,526 - MPMX19_00147 0.77 -0.4
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 +0.2
158,526 - MPMX19_00147 0.77 -1.7
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 +0.9
158,526 - MPMX19_00147 0.77 +0.4
158,526 - MPMX19_00147 0.77 -0.4
158,526 - MPMX19_00147 0.77 -0.4
158,582 + MPMX19_00147 0.84 +0.9
158,583 - MPMX19_00147 0.84 -1.1
158,583 - MPMX19_00147 0.84 +0.9
158,583 - MPMX19_00147 0.84 -2.5
158,731 + -1.6
158,731 + -0.5
158,732 - -0.2
158,732 - +0.6
158,732 - -1.1
158,732 - +0.5
158,787 + +1.3
158,787 + -0.1
158,787 + -2.5
158,787 + -0.8
158,787 + -0.5
158,788 - -1.5
158,788 - -0.4
158,788 - -2.1
158,788 - -1.3
158,788 - -1.1
158,788 - -0.8
158,788 - -0.1
158,986 + MPMX19_00148 0.38 -1.4
158,987 - MPMX19_00148 0.38 -1.2
158,987 - MPMX19_00148 0.38 +0.5
158,987 - MPMX19_00148 0.38 -2.0
159,344 + MPMX19_00149 0.11 +0.2
159,497 + MPMX19_00149 0.44 -1.9
159,497 + MPMX19_00149 0.44 -0.9
159,497 + MPMX19_00149 0.44 -0.7
159,498 - MPMX19_00149 0.44 -0.4
159,498 - MPMX19_00149 0.44 -2.8
159,498 - MPMX19_00149 0.44 -0.3
159,498 - MPMX19_00149 0.44 -0.5
159,498 - MPMX19_00149 0.44 -1.9
159,498 - MPMX19_00149 0.44 -0.3
159,498 - MPMX19_00149 0.44 -0.1
159,503 + MPMX19_00149 0.45 +0.9
159,503 + MPMX19_00149 0.45 +0.9
159,503 + MPMX19_00149 0.45 -1.0
159,582 - MPMX19_00149 0.62 +0.9
159,582 - MPMX19_00149 0.62 +1.4
159,611 + MPMX19_00149 0.68 -1.4
159,611 + MPMX19_00149 0.68 -0.7
159,612 - MPMX19_00149 0.68 -2.1
159,612 - MPMX19_00149 0.68 -0.5
159,612 - MPMX19_00149 0.68 -0.7
159,710 + MPMX19_00149 0.89 -1.1
159,710 + MPMX19_00149 0.89 -3.3
159,711 - MPMX19_00149 0.89 -1.4
159,713 - MPMX19_00149 0.89 -1.0
159,723 + +0.5
159,723 + -1.4
159,778 + +2.2
159,778 + -0.5
159,779 - -0.7
159,956 + MPMX19_00150 0.28 -3.3
159,956 + MPMX19_00150 0.28 -2.1
159,956 + MPMX19_00150 0.28 -2.0
159,956 + MPMX19_00150 0.28 +0.9
159,956 + MPMX19_00150 0.28 -0.9
159,956 + MPMX19_00150 0.28 -1.7
159,956 + MPMX19_00150 0.28 -2.4
159,956 + MPMX19_00150 0.28 -3.3
159,956 + MPMX19_00150 0.28 -1.9
159,957 - MPMX19_00150 0.28 -1.4
159,957 - MPMX19_00150 0.28 +0.4
159,957 - MPMX19_00150 0.28 -0.4
159,957 - MPMX19_00150 0.28 -0.5
159,957 - MPMX19_00150 0.28 -0.3
159,957 - MPMX19_00150 0.28 -0.5
159,957 - MPMX19_00150 0.28 -1.1
159,957 - MPMX19_00150 0.28 -1.9
159,957 - MPMX19_00150 0.28 -1.3
159,957 - MPMX19_00150 0.28 -0.1
159,957 - MPMX19_00150 0.28 -1.4
160,039 - MPMX19_00150 0.55 -0.6
160,229 + -0.7
160,229 + -1.9
160,229 + -0.1
160,229 + -1.0
160,229 + +0.9
160,229 + +1.5
160,229 + -1.3
160,230 - -1.1
160,230 - +0.7
160,230 - -1.1
160,230 - +0.7
160,230 - -3.6
160,230 - -0.4
160,230 - +0.6
160,288 + MPMX19_00151 0.12 -1.0
160,288 + MPMX19_00151 0.12 +0.2
160,289 - MPMX19_00151 0.12 -1.4
160,289 - MPMX19_00151 0.12 +0.6

Or see this region's nucleotide sequence