Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00059

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00058 and MPMX19_00059 are separated by 49 nucleotidesMPMX19_00059 and MPMX19_00060 are separated by 79 nucleotidesMPMX19_00060 and MPMX19_00061 are separated by 10 nucleotides MPMX19_00058: MPMX19_00058 - hypothetical protein, at 61,900 to 62,925 _00058 MPMX19_00059: MPMX19_00059 - hypothetical protein, at 62,975 to 63,505 _00059 MPMX19_00060: MPMX19_00060 - hypothetical protein, at 63,585 to 63,932 _00060 MPMX19_00061: MPMX19_00061 - L-lysine 2,3-aminomutase, at 63,943 to 64,980 _00061 Position (kb) 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 62.962 kb on + strandat 62.962 kb on + strandat 62.963 kb on - strandat 62.963 kb on - strandat 62.963 kb on - strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.990 kb on + strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 62.991 kb on - strandat 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.266 kb on + strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.267 kb on - strand, within MPMX19_00059at 63.287 kb on + strand, within MPMX19_00059at 63.287 kb on + strand, within MPMX19_00059at 63.287 kb on + strand, within MPMX19_00059at 63.287 kb on + strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.288 kb on - strand, within MPMX19_00059at 63.506 kb on + strandat 63.514 kb on + strandat 63.562 kb on + strandat 63.562 kb on + strandat 63.562 kb on + strandat 63.562 kb on + strandat 63.563 kb on - strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.584 kb on + strandat 63.585 kb on - strandat 63.585 kb on - strandat 63.585 kb on - strandat 63.585 kb on - strandat 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.633 kb on + strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.634 kb on - strand, within MPMX19_00060at 63.694 kb on + strand, within MPMX19_00060at 63.694 kb on + strand, within MPMX19_00060at 63.695 kb on - strand, within MPMX19_00060at 63.954 kb on - strandat 64.067 kb on + strand, within MPMX19_00061at 64.067 kb on + strand, within MPMX19_00061at 64.067 kb on + strand, within MPMX19_00061at 64.185 kb on - strand, within MPMX19_00061at 64.185 kb on - strand, within MPMX19_00061at 64.185 kb on - strand, within MPMX19_00061

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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62,962 + -0.8
62,962 + -1.5
62,963 - -1.1
62,963 - +1.2
62,963 - -0.9
62,990 + -0.7
62,990 + -1.1
62,990 + +0.1
62,990 + +0.2
62,990 + -1.9
62,990 + -0.8
62,990 + -0.6
62,990 + +0.1
62,990 + +0.0
62,990 + -1.8
62,990 + +0.5
62,990 + -1.1
62,990 + +1.9
62,990 + -0.8
62,990 + -0.7
62,990 + -0.3
62,990 + -1.6
62,991 - -0.1
62,991 - -0.1
62,991 - -0.2
62,991 - +0.1
62,991 - -0.7
62,991 - -1.4
62,991 - +0.2
62,991 - +0.5
62,991 - -0.7
62,991 - +0.3
62,991 - -2.9
63,266 + MPMX19_00059 0.55 +0.5
63,266 + MPMX19_00059 0.55 +0.2
63,266 + MPMX19_00059 0.55 +0.2
63,266 + MPMX19_00059 0.55 -1.5
63,266 + MPMX19_00059 0.55 -1.0
63,266 + MPMX19_00059 0.55 -1.1
63,266 + MPMX19_00059 0.55 -0.1
63,266 + MPMX19_00059 0.55 -0.1
63,266 + MPMX19_00059 0.55 -1.3
63,266 + MPMX19_00059 0.55 -2.3
63,266 + MPMX19_00059 0.55 -1.1
63,266 + MPMX19_00059 0.55 -0.7
63,266 + MPMX19_00059 0.55 -0.1
63,266 + MPMX19_00059 0.55 -0.1
63,266 + MPMX19_00059 0.55 -0.2
63,266 + MPMX19_00059 0.55 -0.7
63,266 + MPMX19_00059 0.55 +0.5
63,266 + MPMX19_00059 0.55 +0.9
63,266 + MPMX19_00059 0.55 -1.7
63,266 + MPMX19_00059 0.55 -0.2
63,266 + MPMX19_00059 0.55 +1.4
63,267 - MPMX19_00059 0.55 -1.0
63,267 - MPMX19_00059 0.55 -1.2
63,267 - MPMX19_00059 0.55 -0.1
63,267 - MPMX19_00059 0.55 -1.2
63,267 - MPMX19_00059 0.55 +0.2
63,267 - MPMX19_00059 0.55 +0.5
63,267 - MPMX19_00059 0.55 +0.5
63,267 - MPMX19_00059 0.55 +0.3
63,267 - MPMX19_00059 0.55 -0.1
63,267 - MPMX19_00059 0.55 +1.6
63,267 - MPMX19_00059 0.55 -0.2
63,267 - MPMX19_00059 0.55 +0.6
63,267 - MPMX19_00059 0.55 +0.3
63,267 - MPMX19_00059 0.55 +1.2
63,267 - MPMX19_00059 0.55 -0.1
63,267 - MPMX19_00059 0.55 +1.5
63,267 - MPMX19_00059 0.55 -1.7
63,267 - MPMX19_00059 0.55 +1.8
63,267 - MPMX19_00059 0.55 +2.5
63,287 + MPMX19_00059 0.59 -1.7
63,287 + MPMX19_00059 0.59 +0.3
63,287 + MPMX19_00059 0.59 -0.3
63,287 + MPMX19_00059 0.59 +0.6
63,288 - MPMX19_00059 0.59 -0.1
63,288 - MPMX19_00059 0.59 -0.3
63,288 - MPMX19_00059 0.59 +0.3
63,288 - MPMX19_00059 0.59 -1.5
63,288 - MPMX19_00059 0.59 +0.6
63,288 - MPMX19_00059 0.59 -1.3
63,288 - MPMX19_00059 0.59 +0.1
63,506 + -2.1
63,514 + -0.7
63,562 + -1.9
63,562 + -0.3
63,562 + -0.5
63,562 + -0.5
63,563 - -0.1
63,584 + +0.3
63,584 + -1.8
63,584 + -0.3
63,584 + -0.1
63,584 + -0.7
63,584 + -1.4
63,584 + +1.1
63,584 + -0.7
63,584 + -0.5
63,585 - +0.5
63,585 - -1.8
63,585 - -0.3
63,585 - -0.1
63,633 + MPMX19_00060 0.14 -1.3
63,633 + MPMX19_00060 0.14 -1.1
63,633 + MPMX19_00060 0.14 +0.6
63,633 + MPMX19_00060 0.14 +0.9
63,633 + MPMX19_00060 0.14 +0.1
63,633 + MPMX19_00060 0.14 +1.6
63,633 + MPMX19_00060 0.14 -0.1
63,633 + MPMX19_00060 0.14 -0.3
63,633 + MPMX19_00060 0.14 -0.6
63,634 - MPMX19_00060 0.14 +0.3
63,634 - MPMX19_00060 0.14 -1.9
63,634 - MPMX19_00060 0.14 +1.5
63,634 - MPMX19_00060 0.14 +0.9
63,634 - MPMX19_00060 0.14 -0.4
63,634 - MPMX19_00060 0.14 -0.1
63,634 - MPMX19_00060 0.14 +0.8
63,634 - MPMX19_00060 0.14 -0.1
63,634 - MPMX19_00060 0.14 -1.4
63,634 - MPMX19_00060 0.14 -0.5
63,694 + MPMX19_00060 0.31 -0.7
63,694 + MPMX19_00060 0.31 -0.1
63,695 - MPMX19_00060 0.32 -1.4
63,954 - +1.2
64,067 + MPMX19_00061 0.12 -0.4
64,067 + MPMX19_00061 0.12 -0.7
64,067 + MPMX19_00061 0.12 -0.5
64,185 - MPMX19_00061 0.23 -0.1
64,185 - MPMX19_00061 0.23 -0.1
64,185 - MPMX19_00061 0.23 +0.9

Or see this region's nucleotide sequence