Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06954 and MPMX19_06955 are separated by 3 nucleotides MPMX19_06955 and MPMX19_06956 are separated by 18 nucleotides MPMX19_06956 and MPMX19_06957 overlap by 8 nucleotides
MPMX19_06954: MPMX19_06954 - hypothetical protein, at 230,468 to 231,445
_06954
MPMX19_06955: MPMX19_06955 - High-affinity branched-chain amino acid transport system permease protein LivH, at 231,449 to 232,336
_06955
MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077
_06956
MPMX19_06957: MPMX19_06957 - Lipopolysaccharide export system ATP-binding protein LptB, at 233,070 to 233,846
_06957
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 231.337 kb on - strand, within MPMX19_06954 at 231.337 kb on - strand, within MPMX19_06954 at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.409 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.482 kb on + strand at 231.482 kb on + strand at 231.483 kb on - strand at 231.483 kb on - strand at 231.537 kb on + strand at 231.538 kb on - strand, within MPMX19_06955 at 231.538 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.892 kb on - strand, within MPMX19_06955 at 231.892 kb on - strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.952 kb on - strand, within MPMX19_06955 at 231.972 kb on + strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 232.032 kb on + strand, within MPMX19_06955 at 232.032 kb on + strand, within MPMX19_06955 at 232.033 kb on - strand, within MPMX19_06955 at 232.033 kb on - strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.051 kb on - strand, within MPMX19_06955 at 232.051 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.260 kb on + strand at 232.260 kb on + strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 233.016 kb on + strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.100 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand at 233.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 230,596 - MPMX19_06954 0.13 +1.5 230,596 - MPMX19_06954 0.13 -1.5 230,596 - MPMX19_06954 0.13 +0.3 230,596 - MPMX19_06954 0.13 -1.8 230,596 - MPMX19_06954 0.13 +0.1 231,337 - MPMX19_06954 0.89 +1.0 231,337 - MPMX19_06954 0.89 +0.4 231,399 + -0.5 231,399 + -2.8 231,399 + -1.3 231,399 + +0.0 231,399 + +0.0 231,399 + -0.8 231,399 + -1.3 231,399 + -1.0 231,399 + -0.4 231,399 + -0.5 231,400 - -1.3 231,400 - +0.0 231,400 - +0.0 231,400 - -0.4 231,400 - +0.0 231,400 - +0.6 231,400 - +0.2 231,400 - -0.2 231,400 - -0.3 231,400 - -0.1 231,400 - +1.3 231,409 + -0.5 231,450 + +1.0 231,450 + -0.5 231,450 + +0.2 231,450 + +0.2 231,451 - +1.2 231,451 - -0.3 231,451 - -2.0 231,451 - -0.3 231,482 + -2.0 231,482 + +0.0 231,483 - +0.0 231,483 - +0.2 231,537 + +0.2 231,538 - MPMX19_06955 0.10 -0.8 231,538 - MPMX19_06955 0.10 -1.0 231,733 - MPMX19_06955 0.32 +0.0 231,733 - MPMX19_06955 0.32 -0.1 231,733 - MPMX19_06955 0.32 +0.0 231,892 - MPMX19_06955 0.50 +0.5 231,892 - MPMX19_06955 0.50 +0.6 231,903 + MPMX19_06955 0.51 +0.2 231,903 + MPMX19_06955 0.51 +0.0 231,903 + MPMX19_06955 0.51 +0.0 231,903 + MPMX19_06955 0.51 +0.7 231,904 - MPMX19_06955 0.51 +0.5 231,904 - MPMX19_06955 0.51 -0.4 231,904 - MPMX19_06955 0.51 -1.0 231,904 - MPMX19_06955 0.51 -0.5 231,952 - MPMX19_06955 0.57 -0.2 231,972 + MPMX19_06955 0.59 -1.4 231,973 - MPMX19_06955 0.59 -0.7 231,973 - MPMX19_06955 0.59 +1.0 231,973 - MPMX19_06955 0.59 -1.5 232,032 + MPMX19_06955 0.66 -1.3 232,032 + MPMX19_06955 0.66 +0.0 232,033 - MPMX19_06955 0.66 -0.3 232,033 - MPMX19_06955 0.66 -0.3 232,050 + MPMX19_06955 0.68 +0.0 232,050 + MPMX19_06955 0.68 +0.3 232,050 + MPMX19_06955 0.68 -0.2 232,051 - MPMX19_06955 0.68 -0.0 232,051 - MPMX19_06955 0.68 -0.4 232,147 - MPMX19_06955 0.79 -0.5 232,147 - MPMX19_06955 0.79 -0.5 232,147 - MPMX19_06955 0.79 -0.8 232,147 - MPMX19_06955 0.79 +1.3 232,147 - MPMX19_06955 0.79 -2.1 232,185 + MPMX19_06955 0.83 -1.5 232,185 + MPMX19_06955 0.83 -1.5 232,185 + MPMX19_06955 0.83 +0.0 232,185 + MPMX19_06955 0.83 +0.0 232,185 + MPMX19_06955 0.83 -1.3 232,185 + MPMX19_06955 0.83 -1.8 232,185 + MPMX19_06955 0.83 -1.5 232,185 + MPMX19_06955 0.83 +0.5 232,185 + MPMX19_06955 0.83 -1.4 232,185 + MPMX19_06955 0.83 +0.6 232,185 + MPMX19_06955 0.83 +0.3 232,185 + MPMX19_06955 0.83 -0.8 232,260 + +0.0 232,260 + +0.0 232,369 - -0.5 232,369 - +0.6 232,369 - -0.6 232,369 - +1.0 232,369 - -0.5 232,369 - +0.6 232,369 - -0.2 233,016 + -1.6 233,100 - +0.2 233,100 - -0.6 233,100 - +1.0 233,100 - -1.8 233,100 - -1.0 233,100 - +0.5 233,100 - -0.8 233,100 - +1.4 233,100 - -0.1 233,100 - -0.1 233,100 - -1.0 233,100 - +0.0 233,100 - -0.5 233,100 - -0.3 233,102 - +0.0 233,102 - -0.1 233,102 - +0.6 233,102 - -0.5 233,102 - -1.0 233,102 - -0.2 233,102 - +1.0 233,102 - +1.0 233,102 - -0.2 233,102 - -0.3 233,102 - -1.5 233,102 - +0.0 233,102 - -1.0 233,102 - -0.5 233,102 - -0.3 233,102 - +0.5 233,102 - +0.6 233,102 - +1.0 233,102 - -2.1 233,102 - -0.1 233,102 - +0.0 233,102 - -0.5 233,102 - -0.3 233,102 - -0.7 233,102 - +0.0 233,102 - +0.1 233,102 - -0.3 233,102 - -0.5 233,102 - +0.0 233,102 - +1.7 233,102 - -0.4 233,102 - -0.3 233,102 - +0.3 233,102 - +0.0 233,102 - -1.0 233,102 - -0.3 233,102 - -1.5 233,102 - +1.5 233,102 - -0.4
Or see this region's nucleotide sequence