Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06502 and MPMX19_06503 are separated by 73 nucleotides MPMX19_06503 and MPMX19_06504 are separated by 294 nucleotides MPMX19_06504 and MPMX19_06505 are separated by 33 nucleotides MPMX19_06505 and MPMX19_06506 overlap by 4 nucleotides MPMX19_06506 and MPMX19_06507 are separated by 29 nucleotides
MPMX19_06502: MPMX19_06502 - 60 kDa chaperonin 1, at 286,549 to 288,180
_06502
MPMX19_06503: MPMX19_06503 - 10 kDa chaperonin 5, at 288,254 to 288,547
_06503
MPMX19_06504: MPMX19_06504 - hypothetical protein, at 288,842 to 288,970
_06504
MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521
_06505
MPMX19_06506: MPMX19_06506 - hypothetical protein, at 290,518 to 290,865
_06506
MPMX19_06507: MPMX19_06507 - hypothetical protein, at 290,895 to 291,938
_06507
Position (kb) 289
290
291 Strain fitness (log2 ratio) -1
0
1 at 288.195 kb on + strand at 288.195 kb on + strand at 288.644 kb on - strand at 288.968 kb on + strand at 288.968 kb on + strand at 289.025 kb on + strand at 289.121 kb on - strand at 289.121 kb on - strand at 289.121 kb on - strand at 289.212 kb on - strand, within MPMX19_06505 at 289.212 kb on - strand, within MPMX19_06505 at 289.212 kb on - strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.619 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 289.622 kb on + strand, within MPMX19_06505 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.686 kb on + strand, within MPMX19_06506 at 290.762 kb on - strand, within MPMX19_06506 at 291.126 kb on + strand, within MPMX19_06507 at 291.126 kb on + strand, within MPMX19_06507 at 291.126 kb on + strand, within MPMX19_06507 at 291.126 kb on + strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.127 kb on - strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.384 kb on + strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507 at 291.517 kb on - strand, within MPMX19_06507
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 288,195 + -1.2 288,195 + -0.5 288,644 - +1.1 288,968 + +0.3 288,968 + -1.1 289,025 + -0.3 289,121 - +1.1 289,121 - +0.3 289,121 - -0.6 289,212 - MPMX19_06505 0.14 -0.7 289,212 - MPMX19_06505 0.14 +0.4 289,212 - MPMX19_06505 0.14 +1.1 289,619 + MPMX19_06505 0.41 +0.2 289,619 + MPMX19_06505 0.41 -0.8 289,619 + MPMX19_06505 0.41 +0.8 289,619 + MPMX19_06505 0.41 +0.7 289,619 + MPMX19_06505 0.41 -0.2 289,619 + MPMX19_06505 0.41 +0.8 289,619 + MPMX19_06505 0.41 +0.6 289,619 + MPMX19_06505 0.41 +0.6 289,619 + MPMX19_06505 0.41 -0.6 289,619 + MPMX19_06505 0.41 -0.9 289,619 + MPMX19_06505 0.41 -0.5 289,622 + MPMX19_06505 0.41 +0.3 289,622 + MPMX19_06505 0.41 +0.1 289,622 + MPMX19_06505 0.41 +0.8 289,622 + MPMX19_06505 0.41 +1.1 289,622 + MPMX19_06505 0.41 -1.5 289,622 + MPMX19_06505 0.41 +1.5 290,686 + MPMX19_06506 0.48 +0.5 290,686 + MPMX19_06506 0.48 -0.3 290,686 + MPMX19_06506 0.48 +0.1 290,686 + MPMX19_06506 0.48 -0.6 290,686 + MPMX19_06506 0.48 +0.5 290,686 + MPMX19_06506 0.48 -1.0 290,762 - MPMX19_06506 0.70 +1.4 291,126 + MPMX19_06507 0.22 -1.0 291,126 + MPMX19_06507 0.22 +1.4 291,126 + MPMX19_06507 0.22 -0.2 291,126 + MPMX19_06507 0.22 -0.2 291,127 - MPMX19_06507 0.22 -0.1 291,127 - MPMX19_06507 0.22 -0.5 291,127 - MPMX19_06507 0.22 +0.0 291,127 - MPMX19_06507 0.22 +0.4 291,384 + MPMX19_06507 0.47 +0.4 291,384 + MPMX19_06507 0.47 -0.5 291,384 + MPMX19_06507 0.47 +1.1 291,384 + MPMX19_06507 0.47 +1.1 291,517 - MPMX19_06507 0.60 +0.1 291,517 - MPMX19_06507 0.60 +0.1 291,517 - MPMX19_06507 0.60 -0.1 291,517 - MPMX19_06507 0.60 -0.6
Or see this region's nucleotide sequence