Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05960 and MPMX19_05961 are separated by 133 nucleotides MPMX19_05961 and MPMX19_05962 are separated by 111 nucleotides MPMX19_05962 and MPMX19_05963 are separated by 4 nucleotides
MPMX19_05960: MPMX19_05960 - hypothetical protein, at 108,895 to 109,155
_05960
MPMX19_05961: MPMX19_05961 - hypothetical protein, at 109,289 to 109,759
_05961
MPMX19_05962: MPMX19_05962 - hypothetical protein, at 109,871 to 111,211
_05962
MPMX19_05963: MPMX19_05963 - UvrABC system protein C, at 111,216 to 113,105
_05963
Position (kb) 109
110
111
112 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.161 kb on + strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.162 kb on - strand at 109.215 kb on + strand at 109.215 kb on + strand at 109.215 kb on + strand at 109.216 kb on - strand at 109.216 kb on - strand at 109.216 kb on - strand at 109.216 kb on - strand at 109.216 kb on - strand at 109.216 kb on - strand at 109.216 kb on - strand at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.466 kb on + strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.467 kb on - strand, within MPMX19_05961 at 109.712 kb on + strand, within MPMX19_05961 at 109.712 kb on + strand, within MPMX19_05961 at 109.712 kb on + strand, within MPMX19_05961 at 109.713 kb on - strand at 109.713 kb on - strand at 109.713 kb on - strand at 109.757 kb on + strand at 109.757 kb on + strand at 109.757 kb on + strand at 109.757 kb on + strand at 109.757 kb on + strand at 109.758 kb on - strand at 109.758 kb on - strand at 109.758 kb on - strand at 109.758 kb on - strand at 109.758 kb on - strand at 109.836 kb on + strand at 109.836 kb on + strand at 109.837 kb on - strand at 109.837 kb on - strand at 109.837 kb on - strand at 109.837 kb on - strand at 110.105 kb on + strand, within MPMX19_05962 at 110.105 kb on + strand, within MPMX19_05962 at 110.105 kb on + strand, within MPMX19_05962 at 110.105 kb on + strand, within MPMX19_05962 at 110.105 kb on + strand, within MPMX19_05962 at 110.105 kb on + strand, within MPMX19_05962 at 110.106 kb on - strand, within MPMX19_05962 at 110.106 kb on - strand, within MPMX19_05962 at 110.106 kb on - strand, within MPMX19_05962 at 110.106 kb on - strand, within MPMX19_05962 at 110.117 kb on + strand, within MPMX19_05962 at 110.118 kb on - strand, within MPMX19_05962 at 110.118 kb on - strand, within MPMX19_05962 at 110.168 kb on + strand, within MPMX19_05962 at 110.168 kb on + strand, within MPMX19_05962 at 110.168 kb on + strand, within MPMX19_05962 at 110.168 kb on + strand, within MPMX19_05962 at 110.168 kb on + strand, within MPMX19_05962 at 110.169 kb on - strand, within MPMX19_05962 at 110.169 kb on - strand, within MPMX19_05962 at 110.169 kb on - strand, within MPMX19_05962 at 110.169 kb on - strand, within MPMX19_05962 at 110.300 kb on + strand, within MPMX19_05962 at 110.300 kb on + strand, within MPMX19_05962 at 110.301 kb on - strand, within MPMX19_05962 at 110.301 kb on - strand, within MPMX19_05962 at 110.384 kb on + strand, within MPMX19_05962 at 110.384 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.659 kb on + strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.660 kb on - strand, within MPMX19_05962 at 110.873 kb on + strand, within MPMX19_05962 at 110.873 kb on + strand, within MPMX19_05962 at 110.873 kb on + strand, within MPMX19_05962 at 110.874 kb on - strand, within MPMX19_05962 at 110.969 kb on + strand, within MPMX19_05962 at 111.044 kb on + strand, within MPMX19_05962 at 111.045 kb on - strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.050 kb on + strand, within MPMX19_05962 at 111.051 kb on - strand, within MPMX19_05962 at 111.051 kb on - strand, within MPMX19_05962 at 111.051 kb on - strand, within MPMX19_05962 at 111.122 kb on + strand at 111.122 kb on + strand at 111.122 kb on + strand at 111.122 kb on + strand at 111.122 kb on + strand at 111.122 kb on + strand at 111.122 kb on + strand at 111.123 kb on - strand at 111.123 kb on - strand at 111.123 kb on - strand at 111.123 kb on - strand at 111.125 kb on + strand at 111.126 kb on - strand at 111.126 kb on - strand at 111.217 kb on + strand at 111.217 kb on + strand at 111.217 kb on + strand at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.573 kb on + strand, within MPMX19_05963 at 111.574 kb on - strand, within MPMX19_05963 at 111.574 kb on - strand, within MPMX19_05963 at 111.574 kb on - strand, within MPMX19_05963 at 111.574 kb on - strand, within MPMX19_05963 at 111.730 kb on + strand, within MPMX19_05963 at 111.730 kb on + strand, within MPMX19_05963 at 111.730 kb on + strand, within MPMX19_05963 at 111.730 kb on + strand, within MPMX19_05963 at 111.730 kb on + strand, within MPMX19_05963 at 111.730 kb on + strand, within MPMX19_05963 at 111.731 kb on - strand, within MPMX19_05963 at 111.731 kb on - strand, within MPMX19_05963 at 111.763 kb on + strand, within MPMX19_05963 at 111.763 kb on + strand, within MPMX19_05963 at 111.763 kb on + strand, within MPMX19_05963 at 111.763 kb on + strand, within MPMX19_05963 at 111.763 kb on + strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.764 kb on - strand, within MPMX19_05963 at 111.775 kb on + strand, within MPMX19_05963 at 111.775 kb on + strand, within MPMX19_05963 at 111.776 kb on - strand, within MPMX19_05963 at 111.776 kb on - strand, within MPMX19_05963 at 111.856 kb on + strand, within MPMX19_05963 at 111.856 kb on + strand, within MPMX19_05963 at 111.856 kb on + strand, within MPMX19_05963 at 111.856 kb on + strand, within MPMX19_05963 at 111.856 kb on + strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 111.857 kb on - strand, within MPMX19_05963 at 112.129 kb on + strand, within MPMX19_05963 at 112.129 kb on + strand, within MPMX19_05963 at 112.129 kb on + strand, within MPMX19_05963 at 112.130 kb on - strand, within MPMX19_05963 at 112.130 kb on - strand, within MPMX19_05963 at 112.130 kb on - strand, within MPMX19_05963
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 109,161 + -2.9 109,161 + -1.4 109,161 + +0.0 109,161 + -2.1 109,161 + +2.1 109,161 + -1.5 109,161 + +0.6 109,161 + +0.5 109,161 + +0.4 109,161 + +0.2 109,162 - -1.7 109,162 - -0.3 109,162 - -0.3 109,162 - -0.1 109,162 - +0.5 109,162 - -0.7 109,162 - -0.6 109,162 - -1.1 109,162 - -1.4 109,162 - -0.3 109,162 - -0.6 109,162 - -1.6 109,162 - +0.9 109,162 - -0.8 109,162 - -2.1 109,162 - -1.1 109,215 + -0.8 109,215 + +1.6 109,215 + -0.2 109,216 - -0.4 109,216 - +1.5 109,216 - -1.1 109,216 - -0.5 109,216 - +0.3 109,216 - -1.8 109,216 - -0.3 109,466 + MPMX19_05961 0.38 -0.1 109,466 + MPMX19_05961 0.38 -1.1 109,466 + MPMX19_05961 0.38 -0.5 109,466 + MPMX19_05961 0.38 -0.7 109,466 + MPMX19_05961 0.38 +0.2 109,466 + MPMX19_05961 0.38 +0.9 109,466 + MPMX19_05961 0.38 -1.1 109,466 + MPMX19_05961 0.38 -0.5 109,466 + MPMX19_05961 0.38 +0.5 109,466 + MPMX19_05961 0.38 -0.4 109,466 + MPMX19_05961 0.38 +0.9 109,466 + MPMX19_05961 0.38 +0.6 109,466 + MPMX19_05961 0.38 -1.9 109,466 + MPMX19_05961 0.38 +1.5 109,466 + MPMX19_05961 0.38 +1.3 109,466 + MPMX19_05961 0.38 -1.1 109,466 + MPMX19_05961 0.38 +0.5 109,466 + MPMX19_05961 0.38 +0.5 109,466 + MPMX19_05961 0.38 -0.3 109,467 - MPMX19_05961 0.38 -0.4 109,467 - MPMX19_05961 0.38 -0.8 109,467 - MPMX19_05961 0.38 +0.3 109,467 - MPMX19_05961 0.38 +0.8 109,467 - MPMX19_05961 0.38 -0.7 109,467 - MPMX19_05961 0.38 +1.1 109,467 - MPMX19_05961 0.38 +1.5 109,467 - MPMX19_05961 0.38 -0.1 109,467 - MPMX19_05961 0.38 +0.5 109,467 - MPMX19_05961 0.38 -1.9 109,467 - MPMX19_05961 0.38 +0.9 109,467 - MPMX19_05961 0.38 -0.3 109,467 - MPMX19_05961 0.38 -0.4 109,467 - MPMX19_05961 0.38 -0.4 109,467 - MPMX19_05961 0.38 -1.0 109,467 - MPMX19_05961 0.38 -0.2 109,712 + MPMX19_05961 0.90 +0.5 109,712 + MPMX19_05961 0.90 +0.6 109,712 + MPMX19_05961 0.90 +1.4 109,713 - -0.7 109,713 - +0.5 109,713 - +0.6 109,757 + -1.7 109,757 + +0.5 109,757 + +1.2 109,757 + -1.4 109,757 + -1.4 109,758 - +0.3 109,758 - +0.0 109,758 - -0.5 109,758 - -0.8 109,758 - -0.0 109,836 + -1.6 109,836 + +0.5 109,837 - -1.1 109,837 - +0.1 109,837 - +0.7 109,837 - +0.9 110,105 + MPMX19_05962 0.17 -1.0 110,105 + MPMX19_05962 0.17 +0.5 110,105 + MPMX19_05962 0.17 +0.3 110,105 + MPMX19_05962 0.17 -1.5 110,105 + MPMX19_05962 0.17 -0.4 110,105 + MPMX19_05962 0.17 +1.2 110,106 - MPMX19_05962 0.18 -0.1 110,106 - MPMX19_05962 0.18 +0.2 110,106 - MPMX19_05962 0.18 -0.7 110,106 - MPMX19_05962 0.18 -0.7 110,117 + MPMX19_05962 0.18 -1.1 110,118 - MPMX19_05962 0.18 -0.9 110,118 - MPMX19_05962 0.18 -0.3 110,168 + MPMX19_05962 0.22 +0.6 110,168 + MPMX19_05962 0.22 +0.1 110,168 + MPMX19_05962 0.22 -1.9 110,168 + MPMX19_05962 0.22 -1.0 110,168 + MPMX19_05962 0.22 -0.6 110,169 - MPMX19_05962 0.22 -1.1 110,169 - MPMX19_05962 0.22 +3.2 110,169 - MPMX19_05962 0.22 -0.3 110,169 - MPMX19_05962 0.22 -0.4 110,300 + MPMX19_05962 0.32 -1.7 110,300 + MPMX19_05962 0.32 +0.6 110,301 - MPMX19_05962 0.32 -1.4 110,301 - MPMX19_05962 0.32 +0.9 110,384 + MPMX19_05962 0.38 +1.2 110,384 + MPMX19_05962 0.38 -1.0 110,659 + MPMX19_05962 0.59 -0.5 110,659 + MPMX19_05962 0.59 +0.4 110,659 + MPMX19_05962 0.59 -1.2 110,659 + MPMX19_05962 0.59 -1.4 110,659 + MPMX19_05962 0.59 -0.7 110,659 + MPMX19_05962 0.59 -1.9 110,659 + MPMX19_05962 0.59 -1.1 110,659 + MPMX19_05962 0.59 -0.7 110,660 - MPMX19_05962 0.59 -0.1 110,660 - MPMX19_05962 0.59 -0.5 110,660 - MPMX19_05962 0.59 -1.1 110,660 - MPMX19_05962 0.59 -0.3 110,660 - MPMX19_05962 0.59 -1.5 110,660 - MPMX19_05962 0.59 +3.2 110,660 - MPMX19_05962 0.59 -0.9 110,660 - MPMX19_05962 0.59 +1.5 110,660 - MPMX19_05962 0.59 -0.3 110,660 - MPMX19_05962 0.59 +0.9 110,873 + MPMX19_05962 0.75 -0.1 110,873 + MPMX19_05962 0.75 -1.1 110,873 + MPMX19_05962 0.75 -0.3 110,874 - MPMX19_05962 0.75 -1.1 110,969 + MPMX19_05962 0.82 +1.2 111,044 + MPMX19_05962 0.87 -2.3 111,045 - MPMX19_05962 0.88 +0.3 111,050 + MPMX19_05962 0.88 -1.1 111,050 + MPMX19_05962 0.88 -0.1 111,050 + MPMX19_05962 0.88 -0.4 111,050 + MPMX19_05962 0.88 +0.9 111,050 + MPMX19_05962 0.88 -0.7 111,050 + MPMX19_05962 0.88 +1.3 111,050 + MPMX19_05962 0.88 -0.4 111,050 + MPMX19_05962 0.88 -0.7 111,051 - MPMX19_05962 0.88 -0.4 111,051 - MPMX19_05962 0.88 -1.4 111,051 - MPMX19_05962 0.88 -0.1 111,122 + +0.3 111,122 + +1.2 111,122 + -1.1 111,122 + -0.7 111,122 + -0.7 111,122 + -0.9 111,122 + +0.6 111,123 - -2.1 111,123 - -0.9 111,123 - -1.3 111,123 - -1.1 111,125 + -0.4 111,126 - -1.8 111,126 - -0.2 111,217 + +0.7 111,217 + +0.2 111,217 + -1.7 111,573 + MPMX19_05963 0.19 +0.3 111,573 + MPMX19_05963 0.19 +0.6 111,573 + MPMX19_05963 0.19 -0.7 111,573 + MPMX19_05963 0.19 -0.9 111,573 + MPMX19_05963 0.19 -0.7 111,573 + MPMX19_05963 0.19 -0.7 111,573 + MPMX19_05963 0.19 +0.6 111,573 + MPMX19_05963 0.19 -2.1 111,573 + MPMX19_05963 0.19 -0.3 111,574 - MPMX19_05963 0.19 -0.7 111,574 - MPMX19_05963 0.19 -0.1 111,574 - MPMX19_05963 0.19 -0.4 111,574 - MPMX19_05963 0.19 -0.4 111,730 + MPMX19_05963 0.27 -0.1 111,730 + MPMX19_05963 0.27 -0.4 111,730 + MPMX19_05963 0.27 +0.2 111,730 + MPMX19_05963 0.27 -1.7 111,730 + MPMX19_05963 0.27 -0.1 111,730 + MPMX19_05963 0.27 -0.1 111,731 - MPMX19_05963 0.27 -0.1 111,731 - MPMX19_05963 0.27 -0.1 111,763 + MPMX19_05963 0.29 -0.8 111,763 + MPMX19_05963 0.29 -0.4 111,763 + MPMX19_05963 0.29 +0.9 111,763 + MPMX19_05963 0.29 -0.3 111,763 + MPMX19_05963 0.29 +0.3 111,764 - MPMX19_05963 0.29 -0.1 111,764 - MPMX19_05963 0.29 -0.4 111,764 - MPMX19_05963 0.29 +1.1 111,764 - MPMX19_05963 0.29 -1.0 111,764 - MPMX19_05963 0.29 -0.3 111,764 - MPMX19_05963 0.29 -0.3 111,764 - MPMX19_05963 0.29 -1.7 111,764 - MPMX19_05963 0.29 -1.2 111,764 - MPMX19_05963 0.29 -0.3 111,775 + MPMX19_05963 0.30 -0.1 111,775 + MPMX19_05963 0.30 -0.1 111,776 - MPMX19_05963 0.30 -0.7 111,776 - MPMX19_05963 0.30 -2.1 111,856 + MPMX19_05963 0.34 -0.4 111,856 + MPMX19_05963 0.34 +0.2 111,856 + MPMX19_05963 0.34 -1.3 111,856 + MPMX19_05963 0.34 -0.0 111,856 + MPMX19_05963 0.34 +0.2 111,857 - MPMX19_05963 0.34 +0.4 111,857 - MPMX19_05963 0.34 +0.2 111,857 - MPMX19_05963 0.34 -0.9 111,857 - MPMX19_05963 0.34 -2.0 111,857 - MPMX19_05963 0.34 +0.9 111,857 - MPMX19_05963 0.34 -1.7 111,857 - MPMX19_05963 0.34 -0.7 112,129 + MPMX19_05963 0.48 +0.1 112,129 + MPMX19_05963 0.48 +0.9 112,129 + MPMX19_05963 0.48 -0.1 112,130 - MPMX19_05963 0.48 -0.6 112,130 - MPMX19_05963 0.48 +0.9 112,130 - MPMX19_05963 0.48 -1.2
Or see this region's nucleotide sequence