Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05350

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05348 and MPMX19_05349 overlap by 4 nucleotidesMPMX19_05349 and MPMX19_05350 overlap by 4 nucleotidesMPMX19_05350 and MPMX19_05351 are separated by 278 nucleotidesMPMX19_05351 and MPMX19_05352 are separated by 93 nucleotides MPMX19_05348: MPMX19_05348 - hypothetical protein, at 19,952 to 21,628 _05348 MPMX19_05349: MPMX19_05349 - hypothetical protein, at 21,625 to 22,563 _05349 MPMX19_05350: MPMX19_05350 - hypothetical protein, at 22,560 to 24,191 _05350 MPMX19_05351: MPMX19_05351 - hypothetical protein, at 24,470 to 24,985 _05351 MPMX19_05352: MPMX19_05352 - putative cysteine-rich protein YhjQ, at 25,079 to 25,423 _05352 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.597 kb on + strandat 22.598 kb on - strandat 22.598 kb on - strandat 22.598 kb on - strandat 22.598 kb on - strandat 22.598 kb on - strandat 22.789 kb on + strand, within MPMX19_05350at 22.798 kb on + strand, within MPMX19_05350at 22.798 kb on + strand, within MPMX19_05350at 22.798 kb on + strand, within MPMX19_05350at 22.798 kb on + strand, within MPMX19_05350at 22.798 kb on + strand, within MPMX19_05350at 22.799 kb on - strand, within MPMX19_05350at 22.799 kb on - strand, within MPMX19_05350at 23.285 kb on - strand, within MPMX19_05350at 23.285 kb on - strand, within MPMX19_05350at 23.332 kb on + strand, within MPMX19_05350at 23.332 kb on + strand, within MPMX19_05350at 23.332 kb on + strand, within MPMX19_05350at 23.332 kb on + strand, within MPMX19_05350at 23.333 kb on - strand, within MPMX19_05350at 23.338 kb on + strand, within MPMX19_05350at 23.338 kb on + strand, within MPMX19_05350at 23.338 kb on + strand, within MPMX19_05350at 23.338 kb on + strand, within MPMX19_05350at 23.338 kb on + strand, within MPMX19_05350at 23.339 kb on - strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.779 kb on + strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.780 kb on - strand, within MPMX19_05350at 23.936 kb on - strand, within MPMX19_05350at 23.959 kb on + strand, within MPMX19_05350at 23.959 kb on + strand, within MPMX19_05350at 23.959 kb on + strand, within MPMX19_05350at 23.959 kb on + strand, within MPMX19_05350at 23.959 kb on + strand, within MPMX19_05350at 23.959 kb on + strand, within MPMX19_05350at 23.960 kb on - strand, within MPMX19_05350at 23.960 kb on - strand, within MPMX19_05350at 23.960 kb on - strand, within MPMX19_05350at 23.966 kb on - strand, within MPMX19_05350at 23.983 kb on + strand, within MPMX19_05350at 23.983 kb on + strand, within MPMX19_05350at 23.983 kb on + strand, within MPMX19_05350at 23.984 kb on - strand, within MPMX19_05350at 24.022 kb on + strand, within MPMX19_05350at 24.022 kb on + strand, within MPMX19_05350at 24.022 kb on + strand, within MPMX19_05350at 24.022 kb on + strand, within MPMX19_05350at 24.023 kb on - strand, within MPMX19_05350at 24.023 kb on - strand, within MPMX19_05350at 24.058 kb on + strandat 24.058 kb on + strandat 24.058 kb on + strandat 24.059 kb on - strandat 24.059 kb on - strandat 24.413 kb on + strandat 24.413 kb on + strandat 24.413 kb on + strandat 24.413 kb on + strandat 24.413 kb on + strandat 24.413 kb on + strandat 24.413 kb on + strandat 24.414 kb on - strandat 24.414 kb on - strandat 24.414 kb on - strandat 24.414 kb on - strandat 24.414 kb on - strandat 24.414 kb on - strandat 24.418 kb on + strandat 24.419 kb on - strandat 24.419 kb on - strandat 24.499 kb on + strandat 24.499 kb on + strandat 24.500 kb on - strandat 24.892 kb on + strand, within MPMX19_05351at 24.892 kb on + strand, within MPMX19_05351at 24.988 kb on + strandat 24.988 kb on + strandat 24.988 kb on + strandat 24.989 kb on - strandat 24.989 kb on - strandat 24.989 kb on - strandat 24.989 kb on - strandat 24.989 kb on - strandat 25.152 kb on + strand, within MPMX19_05352at 25.153 kb on - strand, within MPMX19_05352at 25.153 kb on - strand, within MPMX19_05352at 25.153 kb on - strand, within MPMX19_05352

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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22,597 + +0.8
22,597 + -1.0
22,597 + +0.8
22,597 + +0.8
22,597 + +0.2
22,597 + +0.2
22,597 + +0.4
22,597 + +0.2
22,597 + -0.1
22,597 + +1.0
22,597 + +0.8
22,597 + -1.2
22,597 + +1.0
22,597 + +1.4
22,597 + +0.5
22,597 + +0.2
22,597 + -0.4
22,597 + -0.2
22,597 + +0.5
22,597 + -0.5
22,597 + +0.5
22,597 + +0.2
22,597 + +0.8
22,598 - -0.2
22,598 - +1.4
22,598 - +0.1
22,598 - +0.2
22,598 - +1.2
22,789 + MPMX19_05350 0.14 +0.8
22,798 + MPMX19_05350 0.15 -1.2
22,798 + MPMX19_05350 0.15 +1.1
22,798 + MPMX19_05350 0.15 +0.5
22,798 + MPMX19_05350 0.15 +0.8
22,798 + MPMX19_05350 0.15 +0.3
22,799 - MPMX19_05350 0.15 +0.2
22,799 - MPMX19_05350 0.15 +1.3
23,285 - MPMX19_05350 0.44 +2.0
23,285 - MPMX19_05350 0.44 +0.9
23,332 + MPMX19_05350 0.47 -0.8
23,332 + MPMX19_05350 0.47 -1.0
23,332 + MPMX19_05350 0.47 +0.5
23,332 + MPMX19_05350 0.47 -0.7
23,333 - MPMX19_05350 0.47 -0.5
23,338 + MPMX19_05350 0.48 +1.0
23,338 + MPMX19_05350 0.48 +1.3
23,338 + MPMX19_05350 0.48 -0.8
23,338 + MPMX19_05350 0.48 +0.5
23,338 + MPMX19_05350 0.48 +0.6
23,339 - MPMX19_05350 0.48 +0.4
23,779 + MPMX19_05350 0.75 +1.6
23,779 + MPMX19_05350 0.75 +0.8
23,779 + MPMX19_05350 0.75 +0.9
23,779 + MPMX19_05350 0.75 +0.6
23,779 + MPMX19_05350 0.75 +0.5
23,779 + MPMX19_05350 0.75 +1.9
23,779 + MPMX19_05350 0.75 -0.8
23,779 + MPMX19_05350 0.75 +1.4
23,779 + MPMX19_05350 0.75 +0.5
23,779 + MPMX19_05350 0.75 +0.8
23,779 + MPMX19_05350 0.75 +0.4
23,779 + MPMX19_05350 0.75 -0.5
23,779 + MPMX19_05350 0.75 -0.2
23,779 + MPMX19_05350 0.75 +2.4
23,779 + MPMX19_05350 0.75 +0.3
23,779 + MPMX19_05350 0.75 -1.2
23,779 + MPMX19_05350 0.75 +0.3
23,779 + MPMX19_05350 0.75 -0.2
23,779 + MPMX19_05350 0.75 -1.5
23,779 + MPMX19_05350 0.75 +0.5
23,780 - MPMX19_05350 0.75 +0.5
23,780 - MPMX19_05350 0.75 +1.4
23,780 - MPMX19_05350 0.75 -0.4
23,780 - MPMX19_05350 0.75 -0.4
23,780 - MPMX19_05350 0.75 +1.3
23,780 - MPMX19_05350 0.75 +0.1
23,780 - MPMX19_05350 0.75 +0.1
23,780 - MPMX19_05350 0.75 +0.2
23,936 - MPMX19_05350 0.84 -1.8
23,959 + MPMX19_05350 0.86 +0.7
23,959 + MPMX19_05350 0.86 -1.5
23,959 + MPMX19_05350 0.86 +0.4
23,959 + MPMX19_05350 0.86 -0.2
23,959 + MPMX19_05350 0.86 -0.5
23,959 + MPMX19_05350 0.86 +1.0
23,960 - MPMX19_05350 0.86 +1.5
23,960 - MPMX19_05350 0.86 +1.2
23,960 - MPMX19_05350 0.86 +1.2
23,966 - MPMX19_05350 0.86 +1.8
23,983 + MPMX19_05350 0.87 -0.5
23,983 + MPMX19_05350 0.87 -0.9
23,983 + MPMX19_05350 0.87 -0.5
23,984 - MPMX19_05350 0.87 -0.2
24,022 + MPMX19_05350 0.90 +1.4
24,022 + MPMX19_05350 0.90 +0.8
24,022 + MPMX19_05350 0.90 +0.7
24,022 + MPMX19_05350 0.90 +1.3
24,023 - MPMX19_05350 0.90 -0.5
24,023 - MPMX19_05350 0.90 -0.4
24,058 + -0.5
24,058 + +0.1
24,058 + +0.6
24,059 - -1.2
24,059 - +1.8
24,413 + -1.8
24,413 + +1.8
24,413 + +0.1
24,413 + -0.0
24,413 + -1.5
24,413 + +1.8
24,413 + -0.2
24,414 - +0.8
24,414 - +0.8
24,414 - -2.0
24,414 - +1.2
24,414 - +0.1
24,414 - +0.2
24,418 + -2.2
24,419 - -0.8
24,419 - -1.2
24,499 + -0.1
24,499 + -0.1
24,500 - +1.8
24,892 + MPMX19_05351 0.82 -0.0
24,892 + MPMX19_05351 0.82 +1.8
24,988 + +0.8
24,988 + +0.4
24,988 + +0.5
24,989 - -1.0
24,989 - -0.4
24,989 - +0.5
24,989 - +0.8
24,989 - -0.2
25,152 + MPMX19_05352 0.21 +0.2
25,153 - MPMX19_05352 0.21 +0.3
25,153 - MPMX19_05352 0.21 -0.5
25,153 - MPMX19_05352 0.21 -0.1

Or see this region's nucleotide sequence