Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04858 and MPMX19_04859 are separated by 339 nucleotides MPMX19_04859 and MPMX19_04860 are separated by 51 nucleotides
MPMX19_04858: MPMX19_04858 - hypothetical protein, at 275,071 to 293,739
_04858
MPMX19_04859: MPMX19_04859 - Vitamin B12 import ATP-binding protein BtuD, at 294,079 to 298,164
_04859
MPMX19_04860: MPMX19_04860 - Type I secretion system membrane fusion protein PrsE, at 298,216 to 299,538
_04860
Position (kb) 294
295
296
297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 293.306 kb on + strand at 293.306 kb on + strand at 293.306 kb on + strand at 293.306 kb on + strand at 293.307 kb on - strand at 293.307 kb on - strand at 293.564 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.579 kb on + strand at 293.580 kb on - strand at 293.580 kb on - strand at 293.580 kb on - strand at 293.589 kb on + strand at 293.612 kb on - strand at 293.752 kb on + strand at 293.752 kb on + strand at 293.752 kb on + strand at 293.752 kb on + strand at 293.753 kb on - strand at 293.753 kb on - strand at 293.753 kb on - strand at 293.794 kb on + strand at 293.795 kb on - strand at 293.795 kb on - strand at 293.801 kb on + strand at 293.801 kb on + strand at 293.802 kb on - strand at 294.003 kb on - strand at 294.003 kb on - strand at 294.014 kb on + strand at 294.014 kb on + strand at 294.018 kb on + strand at 294.019 kb on - strand at 294.024 kb on + strand at 294.024 kb on + strand at 294.024 kb on + strand at 294.025 kb on - strand at 294.031 kb on + strand at 294.031 kb on + strand at 294.031 kb on + strand at 294.032 kb on - strand at 294.043 kb on + strand at 294.043 kb on + strand at 294.044 kb on - strand at 294.055 kb on - strand at 294.304 kb on + strand at 294.304 kb on + strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.305 kb on - strand at 294.331 kb on + strand at 294.332 kb on - strand at 294.332 kb on - strand at 294.332 kb on - strand at 294.532 kb on + strand, within MPMX19_04859 at 294.532 kb on + strand, within MPMX19_04859 at 294.533 kb on - strand, within MPMX19_04859 at 294.533 kb on - strand, within MPMX19_04859 at 294.533 kb on - strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.613 kb on + strand, within MPMX19_04859 at 294.614 kb on - strand, within MPMX19_04859 at 294.614 kb on - strand, within MPMX19_04859 at 294.614 kb on - strand, within MPMX19_04859 at 295.237 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.444 kb on + strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.445 kb on - strand, within MPMX19_04859 at 295.586 kb on - strand, within MPMX19_04859 at 295.586 kb on - strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.239 kb on + strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.240 kb on - strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.314 kb on + strand, within MPMX19_04859 at 296.315 kb on - strand, within MPMX19_04859 at 296.315 kb on - strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.332 kb on + strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.333 kb on - strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.404 kb on + strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.405 kb on - strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.491 kb on + strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.492 kb on - strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.800 kb on + strand, within MPMX19_04859 at 296.801 kb on - strand, within MPMX19_04859 at 296.801 kb on - strand, within MPMX19_04859 at 296.801 kb on - strand, within MPMX19_04859 at 297.022 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.243 kb on + strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.244 kb on - strand, within MPMX19_04859 at 297.518 kb on - strand, within MPMX19_04859 at 297.518 kb on - strand, within MPMX19_04859 at 297.601 kb on + strand, within MPMX19_04859 at 297.601 kb on + strand, within MPMX19_04859 at 297.601 kb on + strand, within MPMX19_04859 at 297.602 kb on - strand, within MPMX19_04859 at 297.602 kb on - strand, within MPMX19_04859 at 297.602 kb on - strand, within MPMX19_04859 at 297.628 kb on + strand, within MPMX19_04859 at 297.628 kb on + strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.629 kb on - strand, within MPMX19_04859 at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.823 kb on + strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 297.824 kb on - strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.078 kb on - strand at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.672 kb on + strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.673 kb on - strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.756 kb on + strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860 at 298.757 kb on - strand, within MPMX19_04860
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 293,306 + +0.9 293,306 + +0.2 293,306 + -0.3 293,306 + +0.1 293,307 - +0.1 293,307 - +0.2 293,564 + -0.5 293,579 + +1.6 293,579 + -1.3 293,579 + -0.2 293,579 + -0.9 293,579 + -0.5 293,580 - +1.1 293,580 - -1.0 293,580 - -1.4 293,589 + -0.9 293,612 - +0.2 293,752 + -0.7 293,752 + -0.5 293,752 + -0.1 293,752 + -1.4 293,753 - -0.8 293,753 - -1.8 293,753 - -0.3 293,794 + -0.7 293,795 - -0.5 293,795 - -0.5 293,801 + +0.7 293,801 + +0.9 293,802 - -2.4 294,003 - -0.1 294,003 - -0.5 294,014 + +0.1 294,014 + +0.1 294,018 + +0.3 294,019 - +0.1 294,024 + +1.5 294,024 + -0.5 294,024 + +0.1 294,025 - -0.7 294,031 + -1.5 294,031 + +0.1 294,031 + +0.5 294,032 - -0.7 294,043 + -0.1 294,043 + +0.3 294,044 - -0.2 294,055 - +0.6 294,304 + +0.3 294,304 + +0.2 294,305 - -0.0 294,305 - +0.2 294,305 - -0.5 294,305 - -0.3 294,305 - -0.8 294,305 - +0.1 294,331 + +1.1 294,332 - -0.5 294,332 - -0.7 294,332 - +0.4 294,532 + MPMX19_04859 0.11 -0.9 294,532 + MPMX19_04859 0.11 +1.7 294,533 - MPMX19_04859 0.11 +0.6 294,533 - MPMX19_04859 0.11 +0.1 294,533 - MPMX19_04859 0.11 +0.8 294,613 + MPMX19_04859 0.13 -0.4 294,613 + MPMX19_04859 0.13 +0.3 294,613 + MPMX19_04859 0.13 +0.1 294,613 + MPMX19_04859 0.13 -0.5 294,613 + MPMX19_04859 0.13 +0.5 294,614 - MPMX19_04859 0.13 -0.8 294,614 - MPMX19_04859 0.13 +0.3 294,614 - MPMX19_04859 0.13 +0.4 295,237 + MPMX19_04859 0.28 -2.1 295,444 + MPMX19_04859 0.33 -1.3 295,444 + MPMX19_04859 0.33 -1.5 295,444 + MPMX19_04859 0.33 -0.1 295,444 + MPMX19_04859 0.33 -0.7 295,445 - MPMX19_04859 0.33 +0.3 295,445 - MPMX19_04859 0.33 -0.6 295,445 - MPMX19_04859 0.33 -0.9 295,445 - MPMX19_04859 0.33 +0.6 295,445 - MPMX19_04859 0.33 -0.5 295,445 - MPMX19_04859 0.33 -2.3 295,445 - MPMX19_04859 0.33 -0.8 295,586 - MPMX19_04859 0.37 +0.8 295,586 - MPMX19_04859 0.37 +0.1 296,239 + MPMX19_04859 0.53 +0.6 296,239 + MPMX19_04859 0.53 +0.1 296,239 + MPMX19_04859 0.53 -0.9 296,239 + MPMX19_04859 0.53 -1.3 296,239 + MPMX19_04859 0.53 -0.7 296,239 + MPMX19_04859 0.53 -0.3 296,239 + MPMX19_04859 0.53 -0.9 296,240 - MPMX19_04859 0.53 +0.4 296,240 - MPMX19_04859 0.53 -0.8 296,240 - MPMX19_04859 0.53 +1.1 296,240 - MPMX19_04859 0.53 +0.9 296,240 - MPMX19_04859 0.53 -0.7 296,240 - MPMX19_04859 0.53 -1.4 296,240 - MPMX19_04859 0.53 -0.5 296,240 - MPMX19_04859 0.53 -1.7 296,240 - MPMX19_04859 0.53 +0.3 296,240 - MPMX19_04859 0.53 -0.4 296,314 + MPMX19_04859 0.55 -0.7 296,314 + MPMX19_04859 0.55 +0.1 296,314 + MPMX19_04859 0.55 -0.4 296,314 + MPMX19_04859 0.55 -0.5 296,314 + MPMX19_04859 0.55 +0.3 296,315 - MPMX19_04859 0.55 -0.1 296,315 - MPMX19_04859 0.55 -0.7 296,332 + MPMX19_04859 0.55 -0.5 296,332 + MPMX19_04859 0.55 -0.1 296,332 + MPMX19_04859 0.55 -0.9 296,332 + MPMX19_04859 0.55 -1.5 296,332 + MPMX19_04859 0.55 -0.8 296,332 + MPMX19_04859 0.55 -1.9 296,333 - MPMX19_04859 0.55 +0.3 296,333 - MPMX19_04859 0.55 -0.3 296,333 - MPMX19_04859 0.55 -0.3 296,333 - MPMX19_04859 0.55 +0.1 296,333 - MPMX19_04859 0.55 +0.2 296,404 + MPMX19_04859 0.57 -0.4 296,404 + MPMX19_04859 0.57 -1.3 296,404 + MPMX19_04859 0.57 -0.4 296,404 + MPMX19_04859 0.57 +0.2 296,404 + MPMX19_04859 0.57 -0.5 296,404 + MPMX19_04859 0.57 +0.5 296,405 - MPMX19_04859 0.57 -0.3 296,405 - MPMX19_04859 0.57 +0.1 296,405 - MPMX19_04859 0.57 +0.5 296,405 - MPMX19_04859 0.57 -0.4 296,405 - MPMX19_04859 0.57 +0.3 296,405 - MPMX19_04859 0.57 -0.5 296,405 - MPMX19_04859 0.57 +0.8 296,405 - MPMX19_04859 0.57 +0.5 296,491 + MPMX19_04859 0.59 +0.3 296,491 + MPMX19_04859 0.59 +0.2 296,491 + MPMX19_04859 0.59 -1.3 296,491 + MPMX19_04859 0.59 +1.1 296,491 + MPMX19_04859 0.59 -0.2 296,491 + MPMX19_04859 0.59 -0.5 296,491 + MPMX19_04859 0.59 -0.9 296,491 + MPMX19_04859 0.59 -0.5 296,491 + MPMX19_04859 0.59 -0.3 296,492 - MPMX19_04859 0.59 -0.5 296,492 - MPMX19_04859 0.59 +0.1 296,492 - MPMX19_04859 0.59 +0.1 296,492 - MPMX19_04859 0.59 -0.0 296,492 - MPMX19_04859 0.59 +0.5 296,492 - MPMX19_04859 0.59 -1.3 296,492 - MPMX19_04859 0.59 +1.1 296,800 + MPMX19_04859 0.67 +0.3 296,800 + MPMX19_04859 0.67 +0.6 296,800 + MPMX19_04859 0.67 +4.5 296,800 + MPMX19_04859 0.67 +0.1 296,800 + MPMX19_04859 0.67 -0.9 296,800 + MPMX19_04859 0.67 +0.2 296,800 + MPMX19_04859 0.67 +0.1 296,800 + MPMX19_04859 0.67 +0.3 296,800 + MPMX19_04859 0.67 +0.6 296,801 - MPMX19_04859 0.67 +1.6 296,801 - MPMX19_04859 0.67 +0.5 296,801 - MPMX19_04859 0.67 -0.5 297,022 + MPMX19_04859 0.72 +3.1 297,243 + MPMX19_04859 0.77 +1.9 297,243 + MPMX19_04859 0.77 -0.9 297,243 + MPMX19_04859 0.77 -0.7 297,243 + MPMX19_04859 0.77 +0.1 297,243 + MPMX19_04859 0.77 +0.6 297,244 - MPMX19_04859 0.77 +0.9 297,244 - MPMX19_04859 0.77 +0.1 297,244 - MPMX19_04859 0.77 -1.4 297,244 - MPMX19_04859 0.77 -0.9 297,244 - MPMX19_04859 0.77 -0.1 297,518 - MPMX19_04859 0.84 +0.1 297,518 - MPMX19_04859 0.84 +0.6 297,601 + MPMX19_04859 0.86 -0.1 297,601 + MPMX19_04859 0.86 +0.6 297,601 + MPMX19_04859 0.86 +0.5 297,602 - MPMX19_04859 0.86 +0.2 297,602 - MPMX19_04859 0.86 -0.2 297,602 - MPMX19_04859 0.86 +0.6 297,628 + MPMX19_04859 0.87 +0.5 297,628 + MPMX19_04859 0.87 +1.3 297,629 - MPMX19_04859 0.87 +0.6 297,629 - MPMX19_04859 0.87 +0.7 297,629 - MPMX19_04859 0.87 +0.6 297,629 - MPMX19_04859 0.87 +0.3 297,823 + +0.1 297,823 + +0.3 297,823 + -2.4 297,823 + -0.5 297,824 - -1.1 297,824 - +0.6 297,824 - +0.6 297,824 - -0.9 297,824 - -0.7 297,824 - -2.5 298,077 + -0.2 298,077 + +0.1 298,077 + -1.9 298,078 - +0.4 298,078 - -0.2 298,078 - -0.5 298,078 - -2.7 298,078 - -1.4 298,078 - -1.7 298,672 + MPMX19_04860 0.34 -0.7 298,672 + MPMX19_04860 0.34 -0.8 298,672 + MPMX19_04860 0.34 -1.9 298,672 + MPMX19_04860 0.34 -1.3 298,672 + MPMX19_04860 0.34 -0.9 298,672 + MPMX19_04860 0.34 +1.1 298,672 + MPMX19_04860 0.34 +0.5 298,673 - MPMX19_04860 0.35 +0.1 298,673 - MPMX19_04860 0.35 -0.2 298,673 - MPMX19_04860 0.35 +0.6 298,673 - MPMX19_04860 0.35 +1.1 298,673 - MPMX19_04860 0.35 +0.1 298,673 - MPMX19_04860 0.35 -0.7 298,673 - MPMX19_04860 0.35 +0.3 298,673 - MPMX19_04860 0.35 +2.9 298,673 - MPMX19_04860 0.35 -0.8 298,673 - MPMX19_04860 0.35 -0.5 298,756 + MPMX19_04860 0.41 +0.8 298,756 + MPMX19_04860 0.41 -0.2 298,756 + MPMX19_04860 0.41 -0.9 298,756 + MPMX19_04860 0.41 -0.8 298,756 + MPMX19_04860 0.41 -0.5 298,756 + MPMX19_04860 0.41 +0.4 298,756 + MPMX19_04860 0.41 +1.6 298,756 + MPMX19_04860 0.41 +0.5 298,756 + MPMX19_04860 0.41 +0.3 298,756 + MPMX19_04860 0.41 +0.5 298,756 + MPMX19_04860 0.41 -1.9 298,756 + MPMX19_04860 0.41 -0.5 298,756 + MPMX19_04860 0.41 -0.7 298,757 - MPMX19_04860 0.41 -0.7 298,757 - MPMX19_04860 0.41 +0.7 298,757 - MPMX19_04860 0.41 -0.4 298,757 - MPMX19_04860 0.41 +0.8 298,757 - MPMX19_04860 0.41 -1.0 298,757 - MPMX19_04860 0.41 +0.3 298,757 - MPMX19_04860 0.41 -0.1 298,757 - MPMX19_04860 0.41 +0.6 298,757 - MPMX19_04860 0.41 +1.1 298,757 - MPMX19_04860 0.41 -0.5 298,757 - MPMX19_04860 0.41 -1.1 298,757 - MPMX19_04860 0.41 +0.0
Or see this region's nucleotide sequence