Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04786 and MPMX19_04787 overlap by 4 nucleotides MPMX19_04787 and MPMX19_04788 overlap by 4 nucleotides
MPMX19_04786: MPMX19_04786 - Thymidylate kinase, at 183,922 to 185,208
_04786
MPMX19_04787: MPMX19_04787 - hypothetical protein, at 185,205 to 185,969
_04787
MPMX19_04788: MPMX19_04788 - D-inositol-3-phosphate glycosyltransferase, at 185,966 to 187,231
_04788
Position (kb) 185
186 Strain fitness (log2 ratio) -1
0
1
2 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.244 kb on + strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.245 kb on - strand, within MPMX19_04786 at 184.313 kb on + strand, within MPMX19_04786 at 184.411 kb on + strand, within MPMX19_04786 at 184.412 kb on - strand, within MPMX19_04786 at 184.765 kb on + strand, within MPMX19_04786 at 185.496 kb on + strand, within MPMX19_04787 at 185.892 kb on - strand, within MPMX19_04787 at 185.892 kb on - strand, within MPMX19_04787 at 185.892 kb on - strand, within MPMX19_04787 at 185.947 kb on + strand at 185.948 kb on - strand at 185.948 kb on - strand at 186.024 kb on + strand at 186.024 kb on + strand at 186.024 kb on + strand at 186.024 kb on + strand at 186.025 kb on - strand at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.519 kb on + strand, within MPMX19_04788 at 186.520 kb on - strand, within MPMX19_04788 at 186.520 kb on - strand, within MPMX19_04788 at 186.520 kb on - strand, within MPMX19_04788
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 184,244 + MPMX19_04786 0.25 -0.4 184,244 + MPMX19_04786 0.25 +0.0 184,244 + MPMX19_04786 0.25 -0.1 184,244 + MPMX19_04786 0.25 +0.1 184,244 + MPMX19_04786 0.25 +0.5 184,244 + MPMX19_04786 0.25 +0.3 184,244 + MPMX19_04786 0.25 +1.6 184,244 + MPMX19_04786 0.25 +0.4 184,244 + MPMX19_04786 0.25 -1.3 184,245 - MPMX19_04786 0.25 -0.7 184,245 - MPMX19_04786 0.25 -0.4 184,245 - MPMX19_04786 0.25 -0.1 184,245 - MPMX19_04786 0.25 -1.4 184,245 - MPMX19_04786 0.25 +1.4 184,245 - MPMX19_04786 0.25 -0.5 184,245 - MPMX19_04786 0.25 +0.2 184,313 + MPMX19_04786 0.30 +0.1 184,411 + MPMX19_04786 0.38 +1.5 184,412 - MPMX19_04786 0.38 +1.1 184,765 + MPMX19_04786 0.66 -0.4 185,496 + MPMX19_04787 0.38 +1.1 185,892 - MPMX19_04787 0.90 +0.1 185,892 - MPMX19_04787 0.90 -0.6 185,892 - MPMX19_04787 0.90 +0.4 185,947 + +1.8 185,948 - +0.5 185,948 - +0.8 186,024 + -1.4 186,024 + -0.7 186,024 + +1.4 186,024 + -1.5 186,025 - +0.7 186,519 + MPMX19_04788 0.44 +0.7 186,519 + MPMX19_04788 0.44 +1.0 186,519 + MPMX19_04788 0.44 -1.2 186,519 + MPMX19_04788 0.44 +0.1 186,519 + MPMX19_04788 0.44 -1.4 186,519 + MPMX19_04788 0.44 +1.5 186,519 + MPMX19_04788 0.44 +2.1 186,519 + MPMX19_04788 0.44 +0.1 186,519 + MPMX19_04788 0.44 -0.2 186,520 - MPMX19_04788 0.44 +1.4 186,520 - MPMX19_04788 0.44 -0.3 186,520 - MPMX19_04788 0.44 +0.7
Or see this region's nucleotide sequence