Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03730

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03728 and MPMX19_03729 are separated by 26 nucleotidesMPMX19_03729 and MPMX19_03730 are separated by 116 nucleotidesMPMX19_03730 and MPMX19_03731 are separated by 67 nucleotidesMPMX19_03731 and MPMX19_03732 are separated by 38 nucleotides MPMX19_03728: MPMX19_03728 - hypothetical protein, at 1,174,267 to 1,174,644 _03728 MPMX19_03729: MPMX19_03729 - Peptidoglycan-associated lipoprotein, at 1,174,671 to 1,175,501 _03729 MPMX19_03730: MPMX19_03730 - hypothetical protein, at 1,175,618 to 1,177,177 _03730 MPMX19_03731: MPMX19_03731 - hypothetical protein, at 1,177,245 to 1,177,826 _03731 MPMX19_03732: MPMX19_03732 - hypothetical protein, at 1,177,865 to 1,178,299 _03732 Position (kb) 1175 1176 1177 1178Strain fitness (log2 ratio) -2 -1 0 1 2at 1174.714 kb on + strandat 1174.715 kb on - strandat 1174.715 kb on - strandat 1174.798 kb on + strand, within MPMX19_03729at 1174.798 kb on + strand, within MPMX19_03729at 1174.798 kb on + strand, within MPMX19_03729at 1174.799 kb on - strand, within MPMX19_03729at 1174.799 kb on - strand, within MPMX19_03729at 1174.799 kb on - strand, within MPMX19_03729at 1174.799 kb on - strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.933 kb on + strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1174.934 kb on - strand, within MPMX19_03729at 1175.218 kb on + strand, within MPMX19_03729at 1175.218 kb on + strand, within MPMX19_03729at 1175.219 kb on - strand, within MPMX19_03729at 1175.453 kb on + strandat 1175.453 kb on + strandat 1175.453 kb on + strandat 1175.454 kb on - strandat 1175.454 kb on - strandat 1175.454 kb on - strandat 1175.454 kb on - strandat 1175.454 kb on - strandat 1175.465 kb on + strandat 1175.465 kb on + strandat 1175.466 kb on - strandat 1175.466 kb on - strandat 1175.546 kb on + strandat 1175.546 kb on + strandat 1175.547 kb on - strandat 1175.547 kb on - strandat 1175.619 kb on + strandat 1175.619 kb on + strandat 1175.619 kb on + strandat 1175.619 kb on + strandat 1175.619 kb on + strandat 1175.620 kb on - strandat 1175.620 kb on - strandat 1175.620 kb on - strandat 1175.620 kb on - strandat 1175.620 kb on - strandat 1175.961 kb on + strand, within MPMX19_03730at 1175.961 kb on + strand, within MPMX19_03730at 1175.961 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.964 kb on + strand, within MPMX19_03730at 1175.965 kb on - strand, within MPMX19_03730at 1175.965 kb on - strand, within MPMX19_03730at 1175.965 kb on - strand, within MPMX19_03730at 1175.970 kb on + strand, within MPMX19_03730at 1175.970 kb on + strand, within MPMX19_03730at 1175.970 kb on + strand, within MPMX19_03730at 1175.970 kb on + strand, within MPMX19_03730at 1175.970 kb on + strand, within MPMX19_03730at 1175.970 kb on + strand, within MPMX19_03730at 1175.971 kb on - strand, within MPMX19_03730at 1175.971 kb on - strand, within MPMX19_03730at 1175.971 kb on - strand, within MPMX19_03730at 1175.971 kb on - strand, within MPMX19_03730at 1175.973 kb on + strand, within MPMX19_03730at 1176.186 kb on + strand, within MPMX19_03730at 1176.186 kb on + strand, within MPMX19_03730at 1176.186 kb on + strand, within MPMX19_03730at 1176.186 kb on + strand, within MPMX19_03730at 1176.186 kb on + strand, within MPMX19_03730at 1176.187 kb on - strand, within MPMX19_03730at 1176.187 kb on - strand, within MPMX19_03730at 1176.294 kb on + strand, within MPMX19_03730at 1176.294 kb on + strand, within MPMX19_03730at 1176.294 kb on + strand, within MPMX19_03730at 1176.294 kb on + strand, within MPMX19_03730at 1176.297 kb on + strand, within MPMX19_03730at 1176.297 kb on + strand, within MPMX19_03730at 1176.297 kb on + strand, within MPMX19_03730at 1176.298 kb on - strand, within MPMX19_03730at 1176.298 kb on - strand, within MPMX19_03730at 1176.298 kb on - strand, within MPMX19_03730at 1176.298 kb on - strand, within MPMX19_03730at 1176.298 kb on - strand, within MPMX19_03730at 1176.298 kb on - strand, within MPMX19_03730at 1176.423 kb on + strand, within MPMX19_03730at 1176.424 kb on - strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.780 kb on + strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.781 kb on - strand, within MPMX19_03730at 1176.783 kb on + strand, within MPMX19_03730at 1176.783 kb on + strand, within MPMX19_03730at 1176.783 kb on + strand, within MPMX19_03730at 1176.783 kb on + strand, within MPMX19_03730at 1176.784 kb on - strand, within MPMX19_03730at 1176.784 kb on - strand, within MPMX19_03730at 1176.825 kb on + strand, within MPMX19_03730at 1176.825 kb on + strand, within MPMX19_03730at 1176.826 kb on - strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.978 kb on + strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1176.979 kb on - strand, within MPMX19_03730at 1177.597 kb on + strand, within MPMX19_03731at 1177.597 kb on + strand, within MPMX19_03731at 1177.597 kb on + strand, within MPMX19_03731at 1177.597 kb on + strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.598 kb on - strand, within MPMX19_03731at 1177.802 kb on + strandat 1177.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,174,714 + +1.1
1,174,715 - -0.4
1,174,715 - +1.7
1,174,798 + MPMX19_03729 0.15 +0.4
1,174,798 + MPMX19_03729 0.15 +0.7
1,174,798 + MPMX19_03729 0.15 +0.4
1,174,799 - MPMX19_03729 0.15 +0.7
1,174,799 - MPMX19_03729 0.15 -0.2
1,174,799 - MPMX19_03729 0.15 +0.8
1,174,799 - MPMX19_03729 0.15 +0.6
1,174,933 + MPMX19_03729 0.32 -0.9
1,174,933 + MPMX19_03729 0.32 +1.4
1,174,933 + MPMX19_03729 0.32 -0.1
1,174,933 + MPMX19_03729 0.32 -0.1
1,174,933 + MPMX19_03729 0.32 +1.1
1,174,933 + MPMX19_03729 0.32 -1.2
1,174,933 + MPMX19_03729 0.32 +0.1
1,174,934 - MPMX19_03729 0.32 -0.4
1,174,934 - MPMX19_03729 0.32 +1.7
1,174,934 - MPMX19_03729 0.32 +0.1
1,174,934 - MPMX19_03729 0.32 +0.2
1,174,934 - MPMX19_03729 0.32 +0.6
1,174,934 - MPMX19_03729 0.32 +0.6
1,174,934 - MPMX19_03729 0.32 +0.8
1,174,934 - MPMX19_03729 0.32 +0.3
1,175,218 + MPMX19_03729 0.66 -0.4
1,175,218 + MPMX19_03729 0.66 -0.6
1,175,219 - MPMX19_03729 0.66 -0.9
1,175,453 + +1.3
1,175,453 + +0.4
1,175,453 + +0.5
1,175,454 - +0.8
1,175,454 - +1.5
1,175,454 - -0.9
1,175,454 - +0.2
1,175,454 - +0.4
1,175,465 + +0.8
1,175,465 + -0.2
1,175,466 - +0.1
1,175,466 - -0.5
1,175,546 + +0.1
1,175,546 + +0.5
1,175,547 - +0.1
1,175,547 - -0.7
1,175,619 + +0.1
1,175,619 + -1.3
1,175,619 + -2.2
1,175,619 + -0.9
1,175,619 + -0.3
1,175,620 - +0.1
1,175,620 - +1.1
1,175,620 - +0.6
1,175,620 - -0.9
1,175,620 - +1.1
1,175,961 + MPMX19_03730 0.22 -1.3
1,175,961 + MPMX19_03730 0.22 +1.7
1,175,961 + MPMX19_03730 0.22 +1.1
1,175,964 + MPMX19_03730 0.22 -1.7
1,175,964 + MPMX19_03730 0.22 -1.6
1,175,964 + MPMX19_03730 0.22 +0.1
1,175,964 + MPMX19_03730 0.22 -0.5
1,175,964 + MPMX19_03730 0.22 +0.1
1,175,964 + MPMX19_03730 0.22 -0.7
1,175,964 + MPMX19_03730 0.22 +0.8
1,175,965 - MPMX19_03730 0.22 +1.1
1,175,965 - MPMX19_03730 0.22 +0.1
1,175,965 - MPMX19_03730 0.22 -2.7
1,175,970 + MPMX19_03730 0.23 -0.9
1,175,970 + MPMX19_03730 0.23 -0.1
1,175,970 + MPMX19_03730 0.23 +0.3
1,175,970 + MPMX19_03730 0.23 -0.3
1,175,970 + MPMX19_03730 0.23 -1.3
1,175,970 + MPMX19_03730 0.23 +0.1
1,175,971 - MPMX19_03730 0.23 +0.1
1,175,971 - MPMX19_03730 0.23 -1.2
1,175,971 - MPMX19_03730 0.23 -0.6
1,175,971 - MPMX19_03730 0.23 +1.5
1,175,973 + MPMX19_03730 0.23 +0.1
1,176,186 + MPMX19_03730 0.36 +0.5
1,176,186 + MPMX19_03730 0.36 -0.1
1,176,186 + MPMX19_03730 0.36 +0.1
1,176,186 + MPMX19_03730 0.36 +0.8
1,176,186 + MPMX19_03730 0.36 -0.3
1,176,187 - MPMX19_03730 0.36 -1.6
1,176,187 - MPMX19_03730 0.36 +1.1
1,176,294 + MPMX19_03730 0.43 +1.1
1,176,294 + MPMX19_03730 0.43 -0.9
1,176,294 + MPMX19_03730 0.43 +0.6
1,176,294 + MPMX19_03730 0.43 +0.3
1,176,297 + MPMX19_03730 0.44 -0.4
1,176,297 + MPMX19_03730 0.44 +0.8
1,176,297 + MPMX19_03730 0.44 -1.4
1,176,298 - MPMX19_03730 0.44 +1.1
1,176,298 - MPMX19_03730 0.44 -0.0
1,176,298 - MPMX19_03730 0.44 -0.2
1,176,298 - MPMX19_03730 0.44 +0.4
1,176,298 - MPMX19_03730 0.44 -0.4
1,176,298 - MPMX19_03730 0.44 +0.1
1,176,423 + MPMX19_03730 0.52 -0.3
1,176,424 - MPMX19_03730 0.52 +0.3
1,176,780 + MPMX19_03730 0.74 +0.1
1,176,780 + MPMX19_03730 0.74 -0.4
1,176,780 + MPMX19_03730 0.74 +0.6
1,176,780 + MPMX19_03730 0.74 +1.1
1,176,780 + MPMX19_03730 0.74 +0.3
1,176,780 + MPMX19_03730 0.74 +0.8
1,176,780 + MPMX19_03730 0.74 +0.5
1,176,780 + MPMX19_03730 0.74 +0.6
1,176,780 + MPMX19_03730 0.74 -1.9
1,176,780 + MPMX19_03730 0.74 +0.5
1,176,780 + MPMX19_03730 0.74 +1.1
1,176,780 + MPMX19_03730 0.74 +0.5
1,176,780 + MPMX19_03730 0.74 -1.0
1,176,780 + MPMX19_03730 0.74 -1.3
1,176,781 - MPMX19_03730 0.75 -0.4
1,176,781 - MPMX19_03730 0.75 +0.6
1,176,781 - MPMX19_03730 0.75 +0.1
1,176,781 - MPMX19_03730 0.75 -2.4
1,176,781 - MPMX19_03730 0.75 +0.4
1,176,781 - MPMX19_03730 0.75 -1.2
1,176,781 - MPMX19_03730 0.75 +1.1
1,176,781 - MPMX19_03730 0.75 +0.6
1,176,781 - MPMX19_03730 0.75 -0.1
1,176,781 - MPMX19_03730 0.75 +1.1
1,176,781 - MPMX19_03730 0.75 -0.7
1,176,781 - MPMX19_03730 0.75 -0.4
1,176,783 + MPMX19_03730 0.75 -0.7
1,176,783 + MPMX19_03730 0.75 -0.4
1,176,783 + MPMX19_03730 0.75 -0.2
1,176,783 + MPMX19_03730 0.75 -1.2
1,176,784 - MPMX19_03730 0.75 -0.3
1,176,784 - MPMX19_03730 0.75 -0.2
1,176,825 + MPMX19_03730 0.77 -0.7
1,176,825 + MPMX19_03730 0.77 -0.1
1,176,826 - MPMX19_03730 0.77 -0.4
1,176,978 + MPMX19_03730 0.87 +0.1
1,176,978 + MPMX19_03730 0.87 +0.5
1,176,978 + MPMX19_03730 0.87 +1.9
1,176,978 + MPMX19_03730 0.87 -0.2
1,176,978 + MPMX19_03730 0.87 -1.9
1,176,978 + MPMX19_03730 0.87 -0.4
1,176,978 + MPMX19_03730 0.87 +0.4
1,176,978 + MPMX19_03730 0.87 +0.1
1,176,978 + MPMX19_03730 0.87 -2.6
1,176,978 + MPMX19_03730 0.87 +0.1
1,176,978 + MPMX19_03730 0.87 +0.0
1,176,978 + MPMX19_03730 0.87 -0.2
1,176,978 + MPMX19_03730 0.87 -0.4
1,176,978 + MPMX19_03730 0.87 +0.4
1,176,978 + MPMX19_03730 0.87 -0.7
1,176,978 + MPMX19_03730 0.87 -0.9
1,176,978 + MPMX19_03730 0.87 -0.2
1,176,978 + MPMX19_03730 0.87 -2.0
1,176,979 - MPMX19_03730 0.87 +1.1
1,176,979 - MPMX19_03730 0.87 -1.0
1,176,979 - MPMX19_03730 0.87 -0.3
1,176,979 - MPMX19_03730 0.87 +1.6
1,176,979 - MPMX19_03730 0.87 -0.4
1,176,979 - MPMX19_03730 0.87 -0.2
1,176,979 - MPMX19_03730 0.87 -1.3
1,176,979 - MPMX19_03730 0.87 -0.1
1,176,979 - MPMX19_03730 0.87 -0.4
1,176,979 - MPMX19_03730 0.87 +0.4
1,176,979 - MPMX19_03730 0.87 +0.0
1,176,979 - MPMX19_03730 0.87 +0.1
1,176,979 - MPMX19_03730 0.87 -0.1
1,176,979 - MPMX19_03730 0.87 +0.8
1,176,979 - MPMX19_03730 0.87 -0.3
1,176,979 - MPMX19_03730 0.87 -1.3
1,176,979 - MPMX19_03730 0.87 +1.1
1,176,979 - MPMX19_03730 0.87 -0.3
1,176,979 - MPMX19_03730 0.87 +0.0
1,176,979 - MPMX19_03730 0.87 +0.1
1,176,979 - MPMX19_03730 0.87 -0.6
1,176,979 - MPMX19_03730 0.87 -0.7
1,176,979 - MPMX19_03730 0.87 -0.6
1,176,979 - MPMX19_03730 0.87 +0.7
1,176,979 - MPMX19_03730 0.87 +0.6
1,177,597 + MPMX19_03731 0.60 -0.3
1,177,597 + MPMX19_03731 0.60 +0.6
1,177,597 + MPMX19_03731 0.60 +0.0
1,177,597 + MPMX19_03731 0.60 -1.2
1,177,598 - MPMX19_03731 0.61 +1.0
1,177,598 - MPMX19_03731 0.61 -1.3
1,177,598 - MPMX19_03731 0.61 +0.1
1,177,598 - MPMX19_03731 0.61 +0.6
1,177,598 - MPMX19_03731 0.61 -1.2
1,177,598 - MPMX19_03731 0.61 -0.9
1,177,598 - MPMX19_03731 0.61 -0.2
1,177,598 - MPMX19_03731 0.61 +1.3
1,177,598 - MPMX19_03731 0.61 +0.9
1,177,598 - MPMX19_03731 0.61 -1.4
1,177,802 + -0.4
1,177,803 - -2.3

Or see this region's nucleotide sequence