Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02519

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02518 and MPMX19_02519 are separated by 315 nucleotidesMPMX19_02519 and MPMX19_02520 are separated by 113 nucleotides MPMX19_02518: MPMX19_02518 - tRNA (guanine-N(7)-)-methyltransferase, at 2,636,345 to 2,637,097 _02518 MPMX19_02519: MPMX19_02519 - Ribosome maturation factor RimP, at 2,637,413 to 2,637,862 _02519 MPMX19_02520: MPMX19_02520 - Transcription termination/antitermination protein NusA, at 2,637,976 to 2,639,547 _02520 Position (kb) 2637 2638Strain fitness (log2 ratio) -1 0 1 2at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.941 kb on + strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2636.942 kb on - strand, within MPMX19_02518at 2637.026 kb on + strandat 2637.026 kb on + strandat 2637.026 kb on + strandat 2637.027 kb on - strandat 2637.027 kb on - strandat 2637.027 kb on - strandat 2637.027 kb on - strandat 2637.102 kb on + strandat 2637.102 kb on + strandat 2637.102 kb on + strandat 2637.103 kb on - strandat 2637.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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2,636,941 + MPMX19_02518 0.79 +1.3
2,636,941 + MPMX19_02518 0.79 +1.3
2,636,941 + MPMX19_02518 0.79 +1.3
2,636,941 + MPMX19_02518 0.79 +0.3
2,636,941 + MPMX19_02518 0.79 -0.9
2,636,941 + MPMX19_02518 0.79 +1.3
2,636,941 + MPMX19_02518 0.79 +0.3
2,636,941 + MPMX19_02518 0.79 -0.3
2,636,941 + MPMX19_02518 0.79 +1.0
2,636,941 + MPMX19_02518 0.79 +0.7
2,636,941 + MPMX19_02518 0.79 +1.3
2,636,941 + MPMX19_02518 0.79 -0.1
2,636,941 + MPMX19_02518 0.79 +1.3
2,636,941 + MPMX19_02518 0.79 +0.3
2,636,941 + MPMX19_02518 0.79 +0.9
2,636,941 + MPMX19_02518 0.79 -1.0
2,636,942 - MPMX19_02518 0.79 -1.3
2,636,942 - MPMX19_02518 0.79 -0.9
2,636,942 - MPMX19_02518 0.79 -0.7
2,636,942 - MPMX19_02518 0.79 +0.7
2,636,942 - MPMX19_02518 0.79 +1.8
2,636,942 - MPMX19_02518 0.79 -0.7
2,636,942 - MPMX19_02518 0.79 +0.4
2,636,942 - MPMX19_02518 0.79 -0.6
2,636,942 - MPMX19_02518 0.79 -1.1
2,636,942 - MPMX19_02518 0.79 -0.1
2,636,942 - MPMX19_02518 0.79 -0.7
2,636,942 - MPMX19_02518 0.79 +0.9
2,636,942 - MPMX19_02518 0.79 +2.0
2,636,942 - MPMX19_02518 0.79 +0.5
2,637,026 + -0.9
2,637,026 + -0.3
2,637,026 + -1.3
2,637,027 - -0.7
2,637,027 - +1.4
2,637,027 - +0.7
2,637,027 - +1.7
2,637,102 + -0.0
2,637,102 + +0.7
2,637,102 + +0.9
2,637,103 - +0.0
2,637,103 - +0.3

Or see this region's nucleotide sequence