Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02446

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02444 and MPMX19_02445 are separated by 26 nucleotidesMPMX19_02445 and MPMX19_02446 are separated by 282 nucleotidesMPMX19_02446 and MPMX19_02447 are separated by 4 nucleotides MPMX19_02444: MPMX19_02444 - hypothetical protein, at 2,565,353 to 2,566,117 _02444 MPMX19_02445: MPMX19_02445 - hypothetical protein, at 2,566,144 to 2,566,584 _02445 MPMX19_02446: MPMX19_02446 - Release factor glutamine methyltransferase, at 2,566,867 to 2,567,715 _02446 MPMX19_02447: MPMX19_02447 - Peptide chain release factor RF1, at 2,567,720 to 2,568,805 _02447 Position (kb) 2566 2567 2568Strain fitness (log2 ratio) -3 -2 -1 0 1at 2566.031 kb on + strand, within MPMX19_02444at 2566.031 kb on + strand, within MPMX19_02444at 2566.032 kb on - strand, within MPMX19_02444at 2566.115 kb on + strandat 2566.115 kb on + strandat 2566.115 kb on + strandat 2566.116 kb on - strandat 2566.116 kb on - strandat 2566.131 kb on + strandat 2566.131 kb on + strandat 2566.131 kb on + strandat 2566.131 kb on + strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.132 kb on - strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.142 kb on + strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.143 kb on - strandat 2566.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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2,566,031 + MPMX19_02444 0.89 -1.6
2,566,031 + MPMX19_02444 0.89 -0.8
2,566,032 - MPMX19_02444 0.89 -0.9
2,566,115 + +0.1
2,566,115 + +0.1
2,566,115 + -1.9
2,566,116 - -0.7
2,566,116 - -0.7
2,566,131 + -0.3
2,566,131 + -0.1
2,566,131 + -1.8
2,566,131 + +0.3
2,566,132 - -0.7
2,566,132 - -0.9
2,566,132 - -1.7
2,566,132 - -0.9
2,566,132 - -0.6
2,566,132 - -0.6
2,566,132 - +0.6
2,566,132 - -0.3
2,566,132 - -0.3
2,566,132 - -0.9
2,566,132 - -0.6
2,566,132 - +1.7
2,566,142 + +0.7
2,566,142 + +0.7
2,566,142 + +0.7
2,566,142 + +0.1
2,566,142 + -0.9
2,566,142 + -0.3
2,566,142 + +1.7
2,566,142 + -0.4
2,566,142 + -1.7
2,566,142 + +0.7
2,566,142 + -0.3
2,566,142 + -0.7
2,566,142 + -2.5
2,566,142 + +0.3
2,566,142 + -3.3
2,566,142 + -1.9
2,566,142 + -0.9
2,566,142 + -1.2
2,566,143 - +0.3
2,566,143 - -0.1
2,566,143 - +1.3
2,566,143 - -0.0
2,566,143 - -0.1
2,566,143 - +0.8
2,566,143 - -0.1
2,566,143 - -0.3
2,566,143 - +0.7
2,566,143 - +0.7
2,566,143 - -0.9
2,566,143 - -0.3
2,566,818 - -0.3

Or see this region's nucleotide sequence