Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01832

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01830 and MPMX19_01831 are separated by 6 nucleotidesMPMX19_01831 and MPMX19_01832 are separated by 290 nucleotidesMPMX19_01832 and MPMX19_01833 are separated by 170 nucleotides MPMX19_01830: MPMX19_01830 - hypothetical protein, at 1,911,799 to 1,912,086 _01830 MPMX19_01831: MPMX19_01831 - hypothetical protein, at 1,912,093 to 1,912,482 _01831 MPMX19_01832: MPMX19_01832 - hypothetical protein, at 1,912,773 to 1,913,567 _01832 MPMX19_01833: MPMX19_01833 - Sensor histidine kinase RcsC, at 1,913,738 to 1,915,915 _01833 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1911.811 kb on + strandat 1911.811 kb on + strandat 1912.241 kb on + strand, within MPMX19_01831at 1912.241 kb on + strand, within MPMX19_01831at 1912.241 kb on + strand, within MPMX19_01831at 1912.241 kb on + strand, within MPMX19_01831at 1912.242 kb on - strand, within MPMX19_01831at 1912.242 kb on - strand, within MPMX19_01831at 1912.242 kb on - strand, within MPMX19_01831at 1912.242 kb on - strand, within MPMX19_01831at 1912.242 kb on - strand, within MPMX19_01831at 1912.242 kb on - strand, within MPMX19_01831at 1912.427 kb on + strand, within MPMX19_01831at 1912.427 kb on + strand, within MPMX19_01831at 1912.428 kb on - strand, within MPMX19_01831at 1912.428 kb on - strand, within MPMX19_01831at 1912.428 kb on - strand, within MPMX19_01831at 1912.608 kb on + strandat 1912.609 kb on - strandat 1912.611 kb on + strandat 1912.611 kb on + strandat 1912.686 kb on + strandat 1912.686 kb on + strandat 1912.686 kb on + strandat 1912.686 kb on + strandat 1912.686 kb on + strandat 1912.686 kb on + strandat 1912.687 kb on - strandat 1912.687 kb on - strandat 1912.687 kb on - strandat 1912.687 kb on - strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.789 kb on + strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.790 kb on - strandat 1912.868 kb on + strand, within MPMX19_01832at 1912.869 kb on - strand, within MPMX19_01832at 1912.869 kb on - strand, within MPMX19_01832at 1912.869 kb on - strand, within MPMX19_01832at 1913.111 kb on + strand, within MPMX19_01832at 1913.111 kb on + strand, within MPMX19_01832at 1913.111 kb on + strand, within MPMX19_01832at 1913.111 kb on + strand, within MPMX19_01832at 1913.111 kb on + strand, within MPMX19_01832at 1913.112 kb on - strand, within MPMX19_01832at 1913.112 kb on - strand, within MPMX19_01832at 1913.112 kb on - strand, within MPMX19_01832at 1913.565 kb on + strandat 1913.565 kb on + strandat 1913.604 kb on + strandat 1913.604 kb on + strandat 1913.604 kb on + strandat 1913.604 kb on + strandat 1913.604 kb on + strandat 1913.604 kb on + strandat 1913.604 kb on + strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.605 kb on - strandat 1913.659 kb on + strandat 1913.659 kb on + strandat 1913.660 kb on - strandat 1913.660 kb on - strandat 1913.660 kb on - strandat 1914.032 kb on + strand, within MPMX19_01833at 1914.033 kb on - strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.140 kb on + strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.141 kb on - strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.323 kb on + strand, within MPMX19_01833at 1914.324 kb on - strand, within MPMX19_01833at 1914.324 kb on - strand, within MPMX19_01833at 1914.324 kb on - strand, within MPMX19_01833at 1914.324 kb on - strand, within MPMX19_01833at 1914.324 kb on - strand, within MPMX19_01833at 1914.324 kb on - strand, within MPMX19_01833at 1914.338 kb on + strand, within MPMX19_01833at 1914.338 kb on + strand, within MPMX19_01833at 1914.339 kb on - strand, within MPMX19_01833at 1914.339 kb on - strand, within MPMX19_01833at 1914.339 kb on - strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on + strand, within MPMX19_01833at 1914.560 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.561 kb on - strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.562 kb on + strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833at 1914.563 kb on - strand, within MPMX19_01833

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,911,811 + +1.4
1,911,811 + +0.1
1,912,241 + MPMX19_01831 0.38 +0.4
1,912,241 + MPMX19_01831 0.38 +0.8
1,912,241 + MPMX19_01831 0.38 -0.5
1,912,241 + MPMX19_01831 0.38 +0.7
1,912,242 - MPMX19_01831 0.38 +1.1
1,912,242 - MPMX19_01831 0.38 -0.9
1,912,242 - MPMX19_01831 0.38 +1.3
1,912,242 - MPMX19_01831 0.38 +0.4
1,912,242 - MPMX19_01831 0.38 -0.5
1,912,242 - MPMX19_01831 0.38 +0.5
1,912,427 + MPMX19_01831 0.86 -0.3
1,912,427 + MPMX19_01831 0.86 +2.1
1,912,428 - MPMX19_01831 0.86 -0.7
1,912,428 - MPMX19_01831 0.86 -0.3
1,912,428 - MPMX19_01831 0.86 +0.5
1,912,608 + -0.1
1,912,609 - +0.5
1,912,611 + -2.1
1,912,611 + -0.2
1,912,686 + +0.5
1,912,686 + +0.8
1,912,686 + +1.7
1,912,686 + +0.7
1,912,686 + -1.3
1,912,686 + -2.9
1,912,687 - -0.3
1,912,687 - +0.3
1,912,687 - +0.6
1,912,687 - -0.5
1,912,789 + -0.8
1,912,789 + +0.1
1,912,789 + -0.5
1,912,789 + +0.1
1,912,789 + -1.7
1,912,789 + -0.3
1,912,789 + -0.5
1,912,789 + +0.3
1,912,789 + +0.1
1,912,789 + +0.3
1,912,789 + -0.5
1,912,789 + -0.0
1,912,789 + -0.2
1,912,790 - -0.0
1,912,790 - +0.1
1,912,790 - +1.8
1,912,790 - -0.5
1,912,790 - -0.3
1,912,790 - +0.3
1,912,790 - -1.1
1,912,790 - -0.2
1,912,790 - +0.1
1,912,790 - +0.3
1,912,868 + MPMX19_01832 0.12 -0.3
1,912,869 - MPMX19_01832 0.12 -0.4
1,912,869 - MPMX19_01832 0.12 -1.5
1,912,869 - MPMX19_01832 0.12 -1.7
1,913,111 + MPMX19_01832 0.43 -0.2
1,913,111 + MPMX19_01832 0.43 +1.3
1,913,111 + MPMX19_01832 0.43 -2.5
1,913,111 + MPMX19_01832 0.43 -0.1
1,913,111 + MPMX19_01832 0.43 -1.7
1,913,112 - MPMX19_01832 0.43 -0.4
1,913,112 - MPMX19_01832 0.43 -0.5
1,913,112 - MPMX19_01832 0.43 +0.1
1,913,565 + -0.2
1,913,565 + +0.5
1,913,604 + +0.3
1,913,604 + +0.5
1,913,604 + +0.8
1,913,604 + +1.1
1,913,604 + -0.1
1,913,604 + +0.1
1,913,604 + -1.3
1,913,605 - -0.3
1,913,605 - +0.1
1,913,605 - +1.1
1,913,605 - -0.5
1,913,605 - +0.1
1,913,605 - -0.3
1,913,605 - +0.5
1,913,605 - -1.5
1,913,605 - +1.5
1,913,605 - -0.3
1,913,605 - +0.1
1,913,659 + -0.9
1,913,659 + +1.1
1,913,660 - -1.1
1,913,660 - +0.4
1,913,660 - -0.1
1,914,032 + MPMX19_01833 0.13 -0.9
1,914,033 - MPMX19_01833 0.14 +0.3
1,914,140 + MPMX19_01833 0.18 -0.3
1,914,140 + MPMX19_01833 0.18 -0.2
1,914,140 + MPMX19_01833 0.18 -0.8
1,914,140 + MPMX19_01833 0.18 +0.1
1,914,140 + MPMX19_01833 0.18 -0.3
1,914,140 + MPMX19_01833 0.18 -1.3
1,914,140 + MPMX19_01833 0.18 +0.3
1,914,140 + MPMX19_01833 0.18 +0.5
1,914,140 + MPMX19_01833 0.18 -0.3
1,914,140 + MPMX19_01833 0.18 -0.2
1,914,140 + MPMX19_01833 0.18 -1.5
1,914,140 + MPMX19_01833 0.18 -1.5
1,914,140 + MPMX19_01833 0.18 -1.3
1,914,140 + MPMX19_01833 0.18 +1.5
1,914,140 + MPMX19_01833 0.18 -1.6
1,914,140 + MPMX19_01833 0.18 -0.1
1,914,140 + MPMX19_01833 0.18 -0.9
1,914,140 + MPMX19_01833 0.18 -1.5
1,914,140 + MPMX19_01833 0.18 -1.2
1,914,140 + MPMX19_01833 0.18 +0.3
1,914,140 + MPMX19_01833 0.18 +0.2
1,914,140 + MPMX19_01833 0.18 -0.3
1,914,140 + MPMX19_01833 0.18 -0.4
1,914,140 + MPMX19_01833 0.18 -1.0
1,914,140 + MPMX19_01833 0.18 -0.7
1,914,140 + MPMX19_01833 0.18 -0.3
1,914,140 + MPMX19_01833 0.18 -1.9
1,914,141 - MPMX19_01833 0.19 +1.1
1,914,141 - MPMX19_01833 0.19 -0.7
1,914,141 - MPMX19_01833 0.19 -1.0
1,914,141 - MPMX19_01833 0.19 -0.5
1,914,141 - MPMX19_01833 0.19 +0.1
1,914,141 - MPMX19_01833 0.19 +1.1
1,914,141 - MPMX19_01833 0.19 -0.9
1,914,141 - MPMX19_01833 0.19 +0.3
1,914,141 - MPMX19_01833 0.19 +0.1
1,914,141 - MPMX19_01833 0.19 -1.0
1,914,141 - MPMX19_01833 0.19 -1.3
1,914,141 - MPMX19_01833 0.19 +2.7
1,914,141 - MPMX19_01833 0.19 -0.1
1,914,141 - MPMX19_01833 0.19 -0.2
1,914,141 - MPMX19_01833 0.19 +0.3
1,914,141 - MPMX19_01833 0.19 +1.5
1,914,141 - MPMX19_01833 0.19 -1.5
1,914,141 - MPMX19_01833 0.19 -0.3
1,914,323 + MPMX19_01833 0.27 +1.0
1,914,323 + MPMX19_01833 0.27 -0.1
1,914,323 + MPMX19_01833 0.27 +0.7
1,914,323 + MPMX19_01833 0.27 -0.9
1,914,323 + MPMX19_01833 0.27 +0.3
1,914,323 + MPMX19_01833 0.27 -0.2
1,914,323 + MPMX19_01833 0.27 -1.2
1,914,323 + MPMX19_01833 0.27 -0.5
1,914,323 + MPMX19_01833 0.27 -0.3
1,914,324 - MPMX19_01833 0.27 -0.5
1,914,324 - MPMX19_01833 0.27 -0.1
1,914,324 - MPMX19_01833 0.27 +0.8
1,914,324 - MPMX19_01833 0.27 +0.1
1,914,324 - MPMX19_01833 0.27 +0.2
1,914,324 - MPMX19_01833 0.27 -0.7
1,914,338 + MPMX19_01833 0.28 -0.1
1,914,338 + MPMX19_01833 0.28 +0.3
1,914,339 - MPMX19_01833 0.28 +0.8
1,914,339 - MPMX19_01833 0.28 +0.4
1,914,339 - MPMX19_01833 0.28 -0.5
1,914,560 + MPMX19_01833 0.38 -0.1
1,914,560 + MPMX19_01833 0.38 -0.6
1,914,560 + MPMX19_01833 0.38 +0.5
1,914,560 + MPMX19_01833 0.38 +0.3
1,914,560 + MPMX19_01833 0.38 -1.4
1,914,560 + MPMX19_01833 0.38 +0.3
1,914,560 + MPMX19_01833 0.38 -0.9
1,914,560 + MPMX19_01833 0.38 -0.7
1,914,560 + MPMX19_01833 0.38 +1.1
1,914,560 + MPMX19_01833 0.38 +0.1
1,914,560 + MPMX19_01833 0.38 -1.3
1,914,560 + MPMX19_01833 0.38 +1.1
1,914,560 - MPMX19_01833 0.38 -1.7
1,914,561 - MPMX19_01833 0.38 +0.5
1,914,561 - MPMX19_01833 0.38 -0.4
1,914,561 - MPMX19_01833 0.38 +1.7
1,914,561 - MPMX19_01833 0.38 -0.5
1,914,561 - MPMX19_01833 0.38 -0.2
1,914,561 - MPMX19_01833 0.38 +0.1
1,914,561 - MPMX19_01833 0.38 -0.1
1,914,561 - MPMX19_01833 0.38 -0.2
1,914,562 + MPMX19_01833 0.38 +0.1
1,914,562 + MPMX19_01833 0.38 -1.9
1,914,562 + MPMX19_01833 0.38 +0.1
1,914,562 + MPMX19_01833 0.38 -0.1
1,914,562 + MPMX19_01833 0.38 +0.7
1,914,562 + MPMX19_01833 0.38 +0.2
1,914,562 + MPMX19_01833 0.38 -0.3
1,914,563 - MPMX19_01833 0.38 -0.5
1,914,563 - MPMX19_01833 0.38 +0.3
1,914,563 - MPMX19_01833 0.38 -1.0
1,914,563 - MPMX19_01833 0.38 -0.9
1,914,563 - MPMX19_01833 0.38 -1.7
1,914,563 - MPMX19_01833 0.38 -0.9
1,914,563 - MPMX19_01833 0.38 +0.6
1,914,563 - MPMX19_01833 0.38 +1.4

Or see this region's nucleotide sequence