Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01358

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01356 and MPMX19_01357 are separated by 39 nucleotidesMPMX19_01357 and MPMX19_01358 are separated by 16 nucleotidesMPMX19_01358 and MPMX19_01359 are separated by 108 nucleotides MPMX19_01356: MPMX19_01356 - hypothetical protein, at 1,410,523 to 1,411,053 _01356 MPMX19_01357: MPMX19_01357 - Electron transfer flavoprotein subunit beta, at 1,411,093 to 1,411,842 _01357 MPMX19_01358: MPMX19_01358 - Electron transfer flavoprotein subunit alpha, at 1,411,859 to 1,412,794 _01358 MPMX19_01359: MPMX19_01359 - hypothetical protein, at 1,412,903 to 1,413,793 _01359 Position (kb) 1411 1412 1413Strain fitness (log2 ratio) -2 -1 0 1 2at 1411.058 kb on + strandat 1411.058 kb on + strandat 1411.058 kb on + strandat 1411.059 kb on - strandat 1411.059 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.130 kb on - strandat 1411.960 kb on + strand, within MPMX19_01358at 1411.960 kb on + strand, within MPMX19_01358at 1411.960 kb on + strand, within MPMX19_01358at 1411.960 kb on + strand, within MPMX19_01358at 1411.960 kb on + strand, within MPMX19_01358at 1411.960 kb on + strand, within MPMX19_01358at 1412.023 kb on - strand, within MPMX19_01358at 1412.624 kb on + strand, within MPMX19_01358at 1412.624 kb on + strand, within MPMX19_01358at 1412.624 kb on + strand, within MPMX19_01358at 1412.624 kb on + strand, within MPMX19_01358at 1412.624 kb on + strand, within MPMX19_01358at 1412.624 kb on + strand, within MPMX19_01358at 1412.863 kb on + strandat 1412.863 kb on + strandat 1412.863 kb on + strandat 1412.863 kb on + strandat 1412.863 kb on + strandat 1412.863 kb on + strandat 1412.864 kb on - strandat 1412.864 kb on - strandat 1412.864 kb on - strandat 1412.864 kb on - strandat 1412.864 kb on - strandat 1412.978 kb on + strandat 1412.979 kb on - strandat 1412.979 kb on - strandat 1412.979 kb on - strandat 1412.979 kb on - strandat 1412.979 kb on - strandat 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.068 kb on + strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.069 kb on - strand, within MPMX19_01359at 1413.116 kb on + strand, within MPMX19_01359at 1413.116 kb on + strand, within MPMX19_01359at 1413.116 kb on + strand, within MPMX19_01359at 1413.116 kb on + strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.117 kb on - strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.455 kb on + strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.456 kb on - strand, within MPMX19_01359at 1413.786 kb on + strandat 1413.787 kb on - strandat 1413.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,411,058 + +1.7
1,411,058 + -0.0
1,411,058 + +0.3
1,411,059 - -0.1
1,411,059 - -0.7
1,411,130 - -1.5
1,411,130 - +0.6
1,411,130 - +0.1
1,411,130 - +0.4
1,411,130 - -0.7
1,411,130 - +0.7
1,411,130 - -0.5
1,411,130 - +0.1
1,411,130 - +0.5
1,411,130 - -0.9
1,411,130 - -0.4
1,411,130 - +0.1
1,411,960 + MPMX19_01358 0.11 +0.3
1,411,960 + MPMX19_01358 0.11 +0.3
1,411,960 + MPMX19_01358 0.11 +0.3
1,411,960 + MPMX19_01358 0.11 +1.5
1,411,960 + MPMX19_01358 0.11 -1.2
1,411,960 + MPMX19_01358 0.11 -0.5
1,412,023 - MPMX19_01358 0.18 +0.1
1,412,624 + MPMX19_01358 0.82 -0.5
1,412,624 + MPMX19_01358 0.82 -2.4
1,412,624 + MPMX19_01358 0.82 -0.1
1,412,624 + MPMX19_01358 0.82 +0.5
1,412,624 + MPMX19_01358 0.82 -0.2
1,412,624 + MPMX19_01358 0.82 +0.1
1,412,863 + -2.0
1,412,863 + -1.1
1,412,863 + +1.1
1,412,863 + -1.0
1,412,863 + +0.6
1,412,863 + +1.5
1,412,864 - +1.4
1,412,864 - -0.9
1,412,864 - +0.5
1,412,864 - -0.3
1,412,864 - +1.1
1,412,978 + -0.5
1,412,979 - -0.5
1,412,979 - -0.8
1,412,979 - -0.5
1,412,979 - -1.2
1,412,979 - +0.1
1,413,068 + MPMX19_01359 0.19 -1.8
1,413,068 + MPMX19_01359 0.19 -0.4
1,413,068 + MPMX19_01359 0.19 +2.1
1,413,068 + MPMX19_01359 0.19 -0.6
1,413,068 + MPMX19_01359 0.19 +0.3
1,413,068 + MPMX19_01359 0.19 -0.4
1,413,068 + MPMX19_01359 0.19 -0.7
1,413,068 + MPMX19_01359 0.19 -0.9
1,413,068 + MPMX19_01359 0.19 -1.3
1,413,069 - MPMX19_01359 0.19 +0.6
1,413,069 - MPMX19_01359 0.19 +0.9
1,413,069 - MPMX19_01359 0.19 +2.1
1,413,069 - MPMX19_01359 0.19 -0.5
1,413,069 - MPMX19_01359 0.19 +1.4
1,413,069 - MPMX19_01359 0.19 +0.6
1,413,069 - MPMX19_01359 0.19 +1.3
1,413,069 - MPMX19_01359 0.19 +0.1
1,413,069 - MPMX19_01359 0.19 +0.6
1,413,069 - MPMX19_01359 0.19 -0.9
1,413,069 - MPMX19_01359 0.19 -0.1
1,413,116 + MPMX19_01359 0.24 -0.2
1,413,116 + MPMX19_01359 0.24 -0.4
1,413,116 + MPMX19_01359 0.24 -0.9
1,413,116 + MPMX19_01359 0.24 +0.6
1,413,117 - MPMX19_01359 0.24 -0.2
1,413,117 - MPMX19_01359 0.24 +0.7
1,413,117 - MPMX19_01359 0.24 +0.3
1,413,117 - MPMX19_01359 0.24 +0.4
1,413,117 - MPMX19_01359 0.24 +0.7
1,413,117 - MPMX19_01359 0.24 +1.1
1,413,117 - MPMX19_01359 0.24 +0.3
1,413,117 - MPMX19_01359 0.24 +0.5
1,413,117 - MPMX19_01359 0.24 -0.7
1,413,455 + MPMX19_01359 0.62 +1.1
1,413,455 + MPMX19_01359 0.62 +0.5
1,413,455 + MPMX19_01359 0.62 -0.3
1,413,455 + MPMX19_01359 0.62 +0.3
1,413,455 + MPMX19_01359 0.62 -0.5
1,413,455 + MPMX19_01359 0.62 +0.1
1,413,455 + MPMX19_01359 0.62 -0.9
1,413,455 + MPMX19_01359 0.62 -0.9
1,413,455 + MPMX19_01359 0.62 +0.7
1,413,456 - MPMX19_01359 0.62 -0.2
1,413,456 - MPMX19_01359 0.62 +0.5
1,413,456 - MPMX19_01359 0.62 +0.9
1,413,456 - MPMX19_01359 0.62 -1.9
1,413,456 - MPMX19_01359 0.62 +1.1
1,413,456 - MPMX19_01359 0.62 -0.8
1,413,456 - MPMX19_01359 0.62 -0.9
1,413,456 - MPMX19_01359 0.62 -0.5
1,413,456 - MPMX19_01359 0.62 +0.6
1,413,456 - MPMX19_01359 0.62 +0.2
1,413,456 - MPMX19_01359 0.62 +0.1
1,413,456 - MPMX19_01359 0.62 +2.1
1,413,456 - MPMX19_01359 0.62 -0.2
1,413,456 - MPMX19_01359 0.62 +0.4
1,413,456 - MPMX19_01359 0.62 -0.2
1,413,456 - MPMX19_01359 0.62 -1.5
1,413,456 - MPMX19_01359 0.62 -1.4
1,413,456 - MPMX19_01359 0.62 +0.1
1,413,456 - MPMX19_01359 0.62 +0.1
1,413,456 - MPMX19_01359 0.62 -0.5
1,413,786 + -1.6
1,413,787 - -1.1
1,413,787 - -1.1

Or see this region's nucleotide sequence