Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00225

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00224 and MPMX19_00225 are separated by 200 nucleotidesMPMX19_00225 and MPMX19_00226 are separated by 7 nucleotides MPMX19_00224: MPMX19_00224 - HTH-type transcriptional regulator GltC, at 226,027 to 226,920 _00224 MPMX19_00225: MPMX19_00225 - hypothetical protein, at 227,121 to 227,657 _00225 MPMX19_00226: MPMX19_00226 - hypothetical protein, at 227,665 to 229,218 _00226 Position (kb) 227 228Strain fitness (log2 ratio) -2 -1 0 1 2at 226.286 kb on + strand, within MPMX19_00224at 226.286 kb on + strand, within MPMX19_00224at 226.286 kb on + strand, within MPMX19_00224at 226.286 kb on + strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.706 kb on + strand, within MPMX19_00224at 226.706 kb on + strand, within MPMX19_00224at 226.706 kb on + strand, within MPMX19_00224at 226.707 kb on - strand, within MPMX19_00224at 226.707 kb on - strand, within MPMX19_00224at 226.707 kb on - strand, within MPMX19_00224at 226.927 kb on + strandat 226.927 kb on + strandat 226.927 kb on + strandat 226.928 kb on - strandat 226.961 kb on - strandat 227.013 kb on + strandat 227.013 kb on + strandat 227.013 kb on + strandat 227.013 kb on + strandat 227.014 kb on - strandat 227.014 kb on - strandat 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.352 kb on + strand, within MPMX19_00225at 227.353 kb on - strand, within MPMX19_00225at 227.353 kb on - strand, within MPMX19_00225at 227.353 kb on - strand, within MPMX19_00225at 227.353 kb on - strand, within MPMX19_00225at 227.353 kb on - strand, within MPMX19_00225at 227.487 kb on + strand, within MPMX19_00225at 227.487 kb on + strand, within MPMX19_00225at 227.488 kb on - strand, within MPMX19_00225at 227.526 kb on + strand, within MPMX19_00225at 227.526 kb on + strand, within MPMX19_00225at 227.526 kb on + strand, within MPMX19_00225at 227.527 kb on - strand, within MPMX19_00225at 227.527 kb on - strand, within MPMX19_00225at 227.553 kb on + strand, within MPMX19_00225at 227.553 kb on + strand, within MPMX19_00225at 227.553 kb on + strand, within MPMX19_00225at 227.553 kb on + strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.554 kb on - strand, within MPMX19_00225at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.822 kb on + strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 227.823 kb on - strand, within MPMX19_00226at 228.110 kb on + strand, within MPMX19_00226at 228.111 kb on - strand, within MPMX19_00226at 228.111 kb on - strand, within MPMX19_00226at 228.111 kb on - strand, within MPMX19_00226at 228.176 kb on + strand, within MPMX19_00226at 228.177 kb on - strand, within MPMX19_00226at 228.347 kb on + strand, within MPMX19_00226at 228.348 kb on - strand, within MPMX19_00226at 228.348 kb on - strand, within MPMX19_00226at 228.348 kb on - strand, within MPMX19_00226

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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226,286 + MPMX19_00224 0.29 +1.6
226,286 + MPMX19_00224 0.29 +0.3
226,286 + MPMX19_00224 0.29 -0.1
226,286 + MPMX19_00224 0.29 -1.0
226,287 - MPMX19_00224 0.29 -0.6
226,287 - MPMX19_00224 0.29 +1.0
226,287 - MPMX19_00224 0.29 +0.3
226,287 - MPMX19_00224 0.29 +1.0
226,287 - MPMX19_00224 0.29 +0.2
226,287 - MPMX19_00224 0.29 -0.4
226,287 - MPMX19_00224 0.29 +1.4
226,287 - MPMX19_00224 0.29 +0.8
226,287 - MPMX19_00224 0.29 +1.6
226,287 - MPMX19_00224 0.29 -1.0
226,613 + MPMX19_00224 0.66 -0.5
226,613 + MPMX19_00224 0.66 +1.5
226,613 + MPMX19_00224 0.66 -1.3
226,613 + MPMX19_00224 0.66 -1.3
226,613 + MPMX19_00224 0.66 +0.8
226,613 + MPMX19_00224 0.66 +0.7
226,614 - MPMX19_00224 0.66 +0.4
226,614 - MPMX19_00224 0.66 +0.2
226,614 - MPMX19_00224 0.66 +1.0
226,614 - MPMX19_00224 0.66 -1.6
226,614 - MPMX19_00224 0.66 +1.0
226,614 - MPMX19_00224 0.66 -0.4
226,614 - MPMX19_00224 0.66 -0.6
226,614 - MPMX19_00224 0.66 -0.4
226,706 + MPMX19_00224 0.76 +1.4
226,706 + MPMX19_00224 0.76 -0.8
226,706 + MPMX19_00224 0.76 -0.3
226,707 - MPMX19_00224 0.76 -0.3
226,707 - MPMX19_00224 0.76 +1.0
226,707 - MPMX19_00224 0.76 -0.8
226,927 + +1.4
226,927 + +1.0
226,927 + -0.0
226,928 - -0.2
226,961 - -0.0
227,013 + +1.6
227,013 + +1.0
227,013 + +0.4
227,013 + +1.0
227,014 - -1.6
227,014 - -0.0
227,352 + MPMX19_00225 0.43 -1.6
227,352 + MPMX19_00225 0.43 -0.1
227,352 + MPMX19_00225 0.43 -0.4
227,352 + MPMX19_00225 0.43 +0.3
227,352 + MPMX19_00225 0.43 -1.6
227,352 + MPMX19_00225 0.43 -0.7
227,352 + MPMX19_00225 0.43 +0.6
227,352 + MPMX19_00225 0.43 +1.6
227,353 - MPMX19_00225 0.43 -0.6
227,353 - MPMX19_00225 0.43 +1.0
227,353 - MPMX19_00225 0.43 +1.3
227,353 - MPMX19_00225 0.43 +1.0
227,353 - MPMX19_00225 0.43 -0.0
227,487 + MPMX19_00225 0.68 -0.6
227,487 + MPMX19_00225 0.68 +0.5
227,488 - MPMX19_00225 0.68 +1.0
227,526 + MPMX19_00225 0.75 -1.3
227,526 + MPMX19_00225 0.75 -0.4
227,526 + MPMX19_00225 0.75 +0.2
227,527 - MPMX19_00225 0.76 -0.1
227,527 - MPMX19_00225 0.76 -0.3
227,553 + MPMX19_00225 0.80 +0.4
227,553 + MPMX19_00225 0.80 -0.2
227,553 + MPMX19_00225 0.80 +0.3
227,553 + MPMX19_00225 0.80 +0.6
227,554 - MPMX19_00225 0.81 +1.0
227,554 - MPMX19_00225 0.81 +0.4
227,554 - MPMX19_00225 0.81 -1.3
227,554 - MPMX19_00225 0.81 +0.1
227,554 - MPMX19_00225 0.81 -1.0
227,554 - MPMX19_00225 0.81 +0.0
227,554 - MPMX19_00225 0.81 +0.4
227,554 - MPMX19_00225 0.81 +0.4
227,554 - MPMX19_00225 0.81 +0.8
227,822 + MPMX19_00226 0.10 +1.3
227,822 + MPMX19_00226 0.10 +1.0
227,822 + MPMX19_00226 0.10 -1.0
227,822 + MPMX19_00226 0.10 +0.4
227,822 + MPMX19_00226 0.10 +2.0
227,822 + MPMX19_00226 0.10 +0.4
227,822 + MPMX19_00226 0.10 -2.0
227,822 + MPMX19_00226 0.10 -0.3
227,822 + MPMX19_00226 0.10 +1.6
227,822 + MPMX19_00226 0.10 -1.6
227,822 + MPMX19_00226 0.10 +2.0
227,822 + MPMX19_00226 0.10 -0.6
227,822 + MPMX19_00226 0.10 +0.4
227,822 + MPMX19_00226 0.10 +0.1
227,822 + MPMX19_00226 0.10 -0.6
227,822 + MPMX19_00226 0.10 -0.2
227,822 + MPMX19_00226 0.10 +0.4
227,822 + MPMX19_00226 0.10 +1.7
227,822 + MPMX19_00226 0.10 +0.8
227,822 + MPMX19_00226 0.10 -0.3
227,822 + MPMX19_00226 0.10 -1.0
227,822 + MPMX19_00226 0.10 +1.0
227,822 + MPMX19_00226 0.10 +1.5
227,823 - MPMX19_00226 0.10 +0.2
227,823 - MPMX19_00226 0.10 +0.3
227,823 - MPMX19_00226 0.10 +0.8
227,823 - MPMX19_00226 0.10 -0.7
227,823 - MPMX19_00226 0.10 -1.0
227,823 - MPMX19_00226 0.10 +0.6
227,823 - MPMX19_00226 0.10 -0.1
227,823 - MPMX19_00226 0.10 -0.0
227,823 - MPMX19_00226 0.10 +0.7
227,823 - MPMX19_00226 0.10 -1.3
227,823 - MPMX19_00226 0.10 +0.9
227,823 - MPMX19_00226 0.10 -0.0
227,823 - MPMX19_00226 0.10 -0.0
227,823 - MPMX19_00226 0.10 +1.0
227,823 - MPMX19_00226 0.10 +1.7
227,823 - MPMX19_00226 0.10 -0.0
227,823 - MPMX19_00226 0.10 +1.0
228,110 + MPMX19_00226 0.29 +1.6
228,111 - MPMX19_00226 0.29 +0.4
228,111 - MPMX19_00226 0.29 -0.3
228,111 - MPMX19_00226 0.29 +1.0
228,176 + MPMX19_00226 0.33 +0.0
228,177 - MPMX19_00226 0.33 +1.3
228,347 + MPMX19_00226 0.44 -1.3
228,348 - MPMX19_00226 0.44 +0.0
228,348 - MPMX19_00226 0.44 +0.2
228,348 - MPMX19_00226 0.44 -0.4

Or see this region's nucleotide sequence