Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00063

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00062 and MPMX19_00063 are separated by 254 nucleotidesMPMX19_00063 and MPMX19_00064 are separated by 248 nucleotidesMPMX19_00064 and MPMX19_00065 are separated by 45 nucleotidesMPMX19_00065 and MPMX19_00066 overlap by 4 nucleotides MPMX19_00062: MPMX19_00062 - Glycerophosphodiester phosphodiesterase, cytoplasmic, at 65,047 to 65,790 _00062 MPMX19_00063: MPMX19_00063 - hypothetical protein, at 66,045 to 67,442 _00063 MPMX19_00064: MPMX19_00064 - hypothetical protein, at 67,691 to 68,116 _00064 MPMX19_00065: MPMX19_00065 - hypothetical protein, at 68,162 to 68,395 _00065 MPMX19_00066: MPMX19_00066 - hypothetical protein, at 68,392 to 68,634 _00066 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3at 65.223 kb on + strand, within MPMX19_00062at 65.543 kb on - strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.680 kb on + strand, within MPMX19_00062at 65.681 kb on - strand, within MPMX19_00062at 65.681 kb on - strand, within MPMX19_00062at 65.681 kb on - strand, within MPMX19_00062at 65.681 kb on - strand, within MPMX19_00062at 65.827 kb on - strandat 65.827 kb on - strandat 65.827 kb on - strandat 65.827 kb on - strandat 65.827 kb on - strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.917 kb on + strandat 65.919 kb on + strandat 65.919 kb on + strandat 65.919 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 65.921 kb on + strandat 67.511 kb on + strandat 67.511 kb on + strandat 67.603 kb on + strandat 67.604 kb on - strandat 67.609 kb on + strandat 67.625 kb on + strandat 67.625 kb on + strandat 67.626 kb on - strandat 67.675 kb on + strandat 67.676 kb on - strandat 67.676 kb on - strandat 67.676 kb on - strandat 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.783 kb on + strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.784 kb on - strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.877 kb on + strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.878 kb on - strand, within MPMX19_00064at 67.946 kb on + strand, within MPMX19_00064at 67.946 kb on + strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.947 kb on - strand, within MPMX19_00064at 67.973 kb on + strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 67.974 kb on - strand, within MPMX19_00064at 68.253 kb on + strand, within MPMX19_00065at 68.253 kb on + strand, within MPMX19_00065at 68.253 kb on + strand, within MPMX19_00065at 68.253 kb on + strand, within MPMX19_00065at 68.254 kb on - strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.331 kb on + strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065at 68.332 kb on - strand, within MPMX19_00065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
65,223 + MPMX19_00062 0.24 -0.8
65,543 - MPMX19_00062 0.67 +0.2
65,680 + MPMX19_00062 0.85 +0.7
65,680 + MPMX19_00062 0.85 +0.7
65,680 + MPMX19_00062 0.85 +1.6
65,680 + MPMX19_00062 0.85 -1.0
65,680 + MPMX19_00062 0.85 +2.0
65,680 + MPMX19_00062 0.85 -0.6
65,680 + MPMX19_00062 0.85 +0.2
65,681 - MPMX19_00062 0.85 +1.0
65,681 - MPMX19_00062 0.85 -0.6
65,681 - MPMX19_00062 0.85 -0.3
65,681 - MPMX19_00062 0.85 -0.4
65,827 - -0.0
65,827 - -0.3
65,827 - -0.6
65,827 - +0.6
65,827 - +1.6
65,917 + +1.0
65,917 + -0.0
65,917 + -1.4
65,917 + -0.0
65,919 + +3.0
65,919 + +0.7
65,919 + +1.0
65,921 + -1.8
65,921 + -1.0
65,921 + +0.6
65,921 + +0.7
65,921 + +1.2
65,921 + -0.3
65,921 + -0.1
65,921 + -0.8
65,921 + -0.0
65,921 + -0.0
67,511 + -0.6
67,511 + +0.2
67,603 + -0.7
67,604 - +0.2
67,609 + -1.6
67,625 + +0.6
67,625 + -0.4
67,626 - +1.0
67,675 + -0.6
67,676 - -1.4
67,676 - -1.4
67,676 - +0.4
67,783 + MPMX19_00064 0.22 -0.3
67,783 + MPMX19_00064 0.22 -0.2
67,783 + MPMX19_00064 0.22 -1.1
67,783 + MPMX19_00064 0.22 +1.0
67,783 + MPMX19_00064 0.22 -1.8
67,783 + MPMX19_00064 0.22 -0.4
67,783 + MPMX19_00064 0.22 -0.6
67,784 - MPMX19_00064 0.22 +1.0
67,784 - MPMX19_00064 0.22 +1.0
67,784 - MPMX19_00064 0.22 +0.6
67,784 - MPMX19_00064 0.22 -0.9
67,784 - MPMX19_00064 0.22 +0.7
67,784 - MPMX19_00064 0.22 -1.6
67,877 + MPMX19_00064 0.44 +1.0
67,877 + MPMX19_00064 0.44 -0.4
67,877 + MPMX19_00064 0.44 -0.5
67,877 + MPMX19_00064 0.44 +0.3
67,877 + MPMX19_00064 0.44 -2.0
67,877 + MPMX19_00064 0.44 -1.8
67,877 + MPMX19_00064 0.44 -1.2
67,877 + MPMX19_00064 0.44 -0.2
67,878 - MPMX19_00064 0.44 -1.4
67,878 - MPMX19_00064 0.44 +1.2
67,878 - MPMX19_00064 0.44 -0.9
67,878 - MPMX19_00064 0.44 +1.0
67,878 - MPMX19_00064 0.44 +0.4
67,946 + MPMX19_00064 0.60 -1.0
67,946 + MPMX19_00064 0.60 -1.6
67,947 - MPMX19_00064 0.60 +0.8
67,947 - MPMX19_00064 0.60 -0.0
67,947 - MPMX19_00064 0.60 +0.4
67,947 - MPMX19_00064 0.60 -0.0
67,947 - MPMX19_00064 0.60 -1.0
67,947 - MPMX19_00064 0.60 +1.0
67,947 - MPMX19_00064 0.60 +0.6
67,947 - MPMX19_00064 0.60 +0.1
67,947 - MPMX19_00064 0.60 -1.6
67,973 + MPMX19_00064 0.66 +0.3
67,974 - MPMX19_00064 0.66 -0.2
67,974 - MPMX19_00064 0.66 -0.0
67,974 - MPMX19_00064 0.66 -0.0
67,974 - MPMX19_00064 0.66 -0.4
68,253 + MPMX19_00065 0.39 -0.0
68,253 + MPMX19_00065 0.39 +0.5
68,253 + MPMX19_00065 0.39 +0.2
68,253 + MPMX19_00065 0.39 -0.7
68,254 - MPMX19_00065 0.39 +0.6
68,331 + MPMX19_00065 0.72 -0.4
68,331 + MPMX19_00065 0.72 -0.4
68,331 + MPMX19_00065 0.72 -0.0
68,331 + MPMX19_00065 0.72 -1.7
68,331 + MPMX19_00065 0.72 +0.2
68,331 + MPMX19_00065 0.72 -2.0
68,331 + MPMX19_00065 0.72 -1.0
68,331 + MPMX19_00065 0.72 -1.0
68,331 + MPMX19_00065 0.72 +0.6
68,331 + MPMX19_00065 0.72 -0.2
68,331 + MPMX19_00065 0.72 +0.3
68,331 + MPMX19_00065 0.72 +0.2
68,331 + MPMX19_00065 0.72 -0.6
68,331 + MPMX19_00065 0.72 +1.0
68,331 + MPMX19_00065 0.72 -1.0
68,331 + MPMX19_00065 0.72 -0.8
68,331 + MPMX19_00065 0.72 +0.2
68,331 + MPMX19_00065 0.72 -2.7
68,331 + MPMX19_00065 0.72 -1.2
68,331 + MPMX19_00065 0.72 -0.0
68,331 + MPMX19_00065 0.72 -0.4
68,331 + MPMX19_00065 0.72 -1.6
68,331 + MPMX19_00065 0.72 +1.0
68,331 + MPMX19_00065 0.72 -0.7
68,331 + MPMX19_00065 0.72 -1.0
68,331 + MPMX19_00065 0.72 +0.1
68,331 + MPMX19_00065 0.72 -0.5
68,331 + MPMX19_00065 0.72 -0.6
68,331 + MPMX19_00065 0.72 -0.9
68,331 + MPMX19_00065 0.72 +1.7
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 +0.4
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 +1.0
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 +1.5
68,332 - MPMX19_00065 0.73 +1.6
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 +0.6
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 -0.4
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 +0.8
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 +0.3
68,332 - MPMX19_00065 0.73 -1.4
68,332 - MPMX19_00065 0.73 +0.0
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 -0.5
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 -1.0
68,332 - MPMX19_00065 0.73 +0.3
68,332 - MPMX19_00065 0.73 +0.9
68,332 - MPMX19_00065 0.73 -0.0
68,332 - MPMX19_00065 0.73 +0.2
68,332 - MPMX19_00065 0.73 +0.4
68,332 - MPMX19_00065 0.73 +0.4
68,332 - MPMX19_00065 0.73 +0.6
68,332 - MPMX19_00065 0.73 -0.6
68,332 - MPMX19_00065 0.73 +0.1

Or see this region's nucleotide sequence