Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00047

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00045 and MPMX19_00046 are separated by 150 nucleotidesMPMX19_00046 and MPMX19_00047 are separated by 238 nucleotidesMPMX19_00047 and MPMX19_00048 are separated by 217 nucleotides MPMX19_00045: MPMX19_00045 - Alkaline phosphatase synthesis transcriptional regulatory protein SphR, at 47,461 to 48,165 _00045 MPMX19_00046: MPMX19_00046 - hypothetical protein, at 48,316 to 48,834 _00046 MPMX19_00047: MPMX19_00047 - Riboflavin biosynthesis protein RibBA, at 49,073 to 50,419 _00047 MPMX19_00048: MPMX19_00048 - hypothetical protein, at 50,637 to 51,605 _00048 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 48.172 kb on + strandat 48.172 kb on + strandat 48.172 kb on + strandat 48.172 kb on + strandat 48.172 kb on + strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.173 kb on - strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.246 kb on + strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.247 kb on - strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.249 kb on + strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.250 kb on - strandat 48.755 kb on + strand, within MPMX19_00046at 48.755 kb on + strand, within MPMX19_00046at 48.755 kb on + strand, within MPMX19_00046at 48.756 kb on - strand, within MPMX19_00046at 48.756 kb on - strand, within MPMX19_00046at 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.875 kb on + strandat 48.876 kb on - strandat 48.876 kb on - strandat 48.876 kb on - strandat 48.876 kb on - strandat 50.490 kb on + strandat 50.490 kb on + strandat 50.490 kb on + strandat 50.491 kb on - strandat 50.491 kb on - strandat 50.491 kb on - strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.601 kb on + strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.602 kb on - strandat 50.823 kb on + strand, within MPMX19_00048at 50.823 kb on + strand, within MPMX19_00048at 50.823 kb on + strand, within MPMX19_00048at 50.824 kb on - strand, within MPMX19_00048at 50.824 kb on - strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.883 kb on + strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 50.884 kb on - strand, within MPMX19_00048at 51.339 kb on + strand, within MPMX19_00048at 51.340 kb on - strand, within MPMX19_00048at 51.340 kb on - strand, within MPMX19_00048

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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48,172 + -1.5
48,172 + -0.3
48,172 + -0.6
48,172 + -0.0
48,172 + +0.3
48,173 - +0.8
48,173 - -0.5
48,173 - -0.0
48,173 - +1.0
48,173 - -0.3
48,173 - +0.8
48,173 - +1.4
48,173 - +0.0
48,173 - +1.0
48,173 - +0.5
48,173 - -0.1
48,246 + +1.3
48,246 + +0.4
48,246 + +0.3
48,246 + +1.8
48,246 + +0.4
48,247 - +0.7
48,247 - -0.0
48,247 - -1.0
48,247 - -0.0
48,247 - -0.6
48,247 - +1.0
48,247 - -0.0
48,247 - -1.1
48,247 - -0.3
48,249 + -0.3
48,249 + +1.0
48,249 + +0.6
48,249 + -0.8
48,249 + -1.4
48,249 + +1.3
48,249 + +0.1
48,250 - -0.8
48,250 - -1.2
48,250 - +0.8
48,250 - +0.4
48,250 - -0.0
48,250 - +0.6
48,250 - +0.2
48,250 - -1.0
48,250 - -0.4
48,250 - +1.0
48,250 - +0.5
48,250 - -1.0
48,250 - -0.0
48,250 - -0.0
48,250 - -0.4
48,250 - +0.1
48,250 - -0.6
48,250 - +1.0
48,250 - -0.6
48,250 - +1.2
48,250 - -1.4
48,250 - -1.4
48,250 - -2.4
48,250 - +0.4
48,250 - -1.0
48,250 - -0.4
48,250 - +1.2
48,250 - -0.6
48,250 - -0.6
48,250 - +1.2
48,250 - +0.6
48,755 + MPMX19_00046 0.85 +1.0
48,755 + MPMX19_00046 0.85 -1.4
48,755 + MPMX19_00046 0.85 -2.5
48,756 - MPMX19_00046 0.85 -0.0
48,756 - MPMX19_00046 0.85 -0.4
48,875 + +1.0
48,875 + -0.0
48,875 + -0.2
48,875 + +0.4
48,875 + +1.4
48,875 + -0.1
48,876 - -1.5
48,876 - +0.6
48,876 - -0.6
48,876 - +0.4
50,490 + +1.1
50,490 + -0.6
50,490 + +0.4
50,491 - +1.0
50,491 - +0.6
50,491 - -1.8
50,601 + +0.0
50,601 + -0.0
50,601 + -0.1
50,601 + +1.7
50,602 - -2.0
50,602 - +0.1
50,602 - -0.6
50,602 - -2.0
50,823 + MPMX19_00048 0.19 +0.6
50,823 + MPMX19_00048 0.19 +1.0
50,823 + MPMX19_00048 0.19 +0.5
50,824 - MPMX19_00048 0.19 -0.6
50,824 - MPMX19_00048 0.19 -1.0
50,883 + MPMX19_00048 0.25 -0.6
50,883 + MPMX19_00048 0.25 -0.0
50,883 + MPMX19_00048 0.25 +1.0
50,883 + MPMX19_00048 0.25 +2.2
50,883 + MPMX19_00048 0.25 +1.3
50,883 + MPMX19_00048 0.25 +3.8
50,883 + MPMX19_00048 0.25 +1.0
50,883 + MPMX19_00048 0.25 +2.6
50,883 + MPMX19_00048 0.25 +0.2
50,883 + MPMX19_00048 0.25 -0.6
50,883 + MPMX19_00048 0.25 +1.2
50,884 - MPMX19_00048 0.25 +1.3
50,884 - MPMX19_00048 0.25 +1.4
50,884 - MPMX19_00048 0.25 +0.2
50,884 - MPMX19_00048 0.25 -0.2
50,884 - MPMX19_00048 0.25 -0.0
50,884 - MPMX19_00048 0.25 +0.6
50,884 - MPMX19_00048 0.25 +1.6
50,884 - MPMX19_00048 0.25 -0.0
50,884 - MPMX19_00048 0.25 +0.8
50,884 - MPMX19_00048 0.25 -0.6
50,884 - MPMX19_00048 0.25 -1.4
50,884 - MPMX19_00048 0.25 -0.8
50,884 - MPMX19_00048 0.25 -0.0
51,339 + MPMX19_00048 0.72 +1.3
51,340 - MPMX19_00048 0.73 -0.3
51,340 - MPMX19_00048 0.73 +1.6

Or see this region's nucleotide sequence