Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06985

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06983 and MPMX19_06984 overlap by 4 nucleotidesMPMX19_06984 and MPMX19_06985 overlap by 4 nucleotidesMPMX19_06985 and MPMX19_06986 are separated by 78 nucleotides MPMX19_06983: MPMX19_06983 - putative FAD-linked oxidoreductase, at 264,908 to 266,422 _06983 MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294 _06984 MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199 _06985 MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516 _06986 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 266.425 kb on + strandat 266.822 kb on + strand, within MPMX19_06984at 266.822 kb on + strand, within MPMX19_06984at 266.822 kb on + strand, within MPMX19_06984at 266.823 kb on - strand, within MPMX19_06984at 266.823 kb on - strand, within MPMX19_06984at 266.998 kb on + strand, within MPMX19_06984at 266.999 kb on - strand, within MPMX19_06984at 266.999 kb on - strand, within MPMX19_06984at 267.031 kb on + strand, within MPMX19_06984at 268.006 kb on + strand, within MPMX19_06985at 268.006 kb on + strand, within MPMX19_06985at 268.007 kb on - strand, within MPMX19_06985at 268.007 kb on - strand, within MPMX19_06985at 268.065 kb on - strand, within MPMX19_06985at 268.197 kb on + strandat 268.198 kb on - strandat 268.198 kb on - strandat 268.408 kb on + strand, within MPMX19_06986at 268.408 kb on + strand, within MPMX19_06986at 268.409 kb on - strand, within MPMX19_06986at 268.409 kb on - strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.465 kb on + strand, within MPMX19_06986at 268.466 kb on - strand, within MPMX19_06986at 268.466 kb on - strand, within MPMX19_06986at 268.753 kb on + strand, within MPMX19_06986at 268.753 kb on + strand, within MPMX19_06986at 268.754 kb on - strand, within MPMX19_06986at 268.754 kb on - strand, within MPMX19_06986at 268.901 kb on - strand, within MPMX19_06986at 268.901 kb on - strand, within MPMX19_06986at 268.961 kb on + strand, within MPMX19_06986at 268.962 kb on - strand, within MPMX19_06986at 268.962 kb on - strand, within MPMX19_06986at 268.990 kb on + strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 268.991 kb on - strand, within MPMX19_06986at 269.142 kb on + strand, within MPMX19_06986at 269.143 kb on - strand, within MPMX19_06986at 269.143 kb on - strand, within MPMX19_06986at 269.143 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986at 269.185 kb on - strand, within MPMX19_06986

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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266,425 + -1.0
266,822 + MPMX19_06984 0.46 -0.4
266,822 + MPMX19_06984 0.46 +1.2
266,822 + MPMX19_06984 0.46 -0.9
266,823 - MPMX19_06984 0.46 +0.5
266,823 - MPMX19_06984 0.46 +1.5
266,998 + MPMX19_06984 0.66 -0.2
266,999 - MPMX19_06984 0.66 +0.5
266,999 - MPMX19_06984 0.66 +1.9
267,031 + MPMX19_06984 0.70 -0.5
268,006 + MPMX19_06985 0.79 -1.4
268,006 + MPMX19_06985 0.79 -1.5
268,007 - MPMX19_06985 0.79 -1.0
268,007 - MPMX19_06985 0.79 +1.5
268,065 - MPMX19_06985 0.85 -0.6
268,197 + -1.5
268,198 - -1.0
268,198 - -0.5
268,408 + MPMX19_06986 0.10 -0.2
268,408 + MPMX19_06986 0.10 -0.5
268,409 - MPMX19_06986 0.11 -0.9
268,409 - MPMX19_06986 0.11 -0.8
268,465 + MPMX19_06986 0.15 -1.3
268,465 + MPMX19_06986 0.15 +0.9
268,465 + MPMX19_06986 0.15 +0.5
268,465 + MPMX19_06986 0.15 +0.0
268,466 - MPMX19_06986 0.15 -1.5
268,466 - MPMX19_06986 0.15 +0.5
268,753 + MPMX19_06986 0.38 -0.3
268,753 + MPMX19_06986 0.38 +0.8
268,754 - MPMX19_06986 0.38 +1.0
268,754 - MPMX19_06986 0.38 -0.3
268,901 - MPMX19_06986 0.50 -0.5
268,901 - MPMX19_06986 0.50 -0.3
268,961 + MPMX19_06986 0.55 -0.5
268,962 - MPMX19_06986 0.55 +0.2
268,962 - MPMX19_06986 0.55 -1.8
268,990 + MPMX19_06986 0.57 -0.0
268,991 - MPMX19_06986 0.58 -1.0
268,991 - MPMX19_06986 0.58 -1.1
268,991 - MPMX19_06986 0.58 -1.9
268,991 - MPMX19_06986 0.58 -0.0
268,991 - MPMX19_06986 0.58 -0.1
268,991 - MPMX19_06986 0.58 -2.0
268,991 - MPMX19_06986 0.58 +0.3
269,142 + MPMX19_06986 0.70 -0.0
269,143 - MPMX19_06986 0.70 -1.2
269,143 - MPMX19_06986 0.70 -1.0
269,143 - MPMX19_06986 0.70 +1.4
269,185 - MPMX19_06986 0.73 +0.1
269,185 - MPMX19_06986 0.73 -1.9
269,185 - MPMX19_06986 0.73 +0.3
269,185 - MPMX19_06986 0.73 -0.5
269,185 - MPMX19_06986 0.73 -1.8
269,185 - MPMX19_06986 0.73 -1.9

Or see this region's nucleotide sequence