Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06977

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06976 and MPMX19_06977 are separated by 80 nucleotidesMPMX19_06977 and MPMX19_06978 are separated by 508 nucleotides MPMX19_06976: MPMX19_06976 - (2S)-methylsuccinyl-CoA dehydrogenase, at 253,552 to 255,255 _06976 MPMX19_06977: MPMX19_06977 - 2-oxoglutarate dehydrogenase E1 component, at 255,336 to 258,035 _06977 MPMX19_06978: MPMX19_06978 - Alpha-keto acid-binding periplasmic protein TakP, at 258,544 to 259,629 _06978 Position (kb) 255 256 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 254.489 kb on + strand, within MPMX19_06976at 254.930 kb on + strand, within MPMX19_06976at 254.930 kb on + strand, within MPMX19_06976at 254.930 kb on + strand, within MPMX19_06976at 254.931 kb on - strand, within MPMX19_06976at 254.931 kb on - strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.035 kb on + strand, within MPMX19_06976at 255.036 kb on - strand, within MPMX19_06976at 255.036 kb on - strand, within MPMX19_06976at 255.036 kb on - strand, within MPMX19_06976at 255.279 kb on + strandat 255.281 kb on + strandat 255.281 kb on + strandat 255.281 kb on + strandat 255.281 kb on + strandat 255.282 kb on - strandat 255.538 kb on + strandat 255.538 kb on + strandat 255.538 kb on + strandat 255.538 kb on + strandat 255.539 kb on - strandat 255.539 kb on - strandat 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.640 kb on + strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.641 kb on - strand, within MPMX19_06977at 255.709 kb on + strand, within MPMX19_06977at 255.710 kb on - strand, within MPMX19_06977at 255.908 kb on - strand, within MPMX19_06977at 255.908 kb on - strand, within MPMX19_06977at 256.165 kb on + strand, within MPMX19_06977at 256.165 kb on + strand, within MPMX19_06977at 256.165 kb on + strand, within MPMX19_06977at 256.166 kb on - strand, within MPMX19_06977at 256.166 kb on - strand, within MPMX19_06977at 256.185 kb on + strand, within MPMX19_06977at 256.186 kb on - strand, within MPMX19_06977at 256.192 kb on + strand, within MPMX19_06977at 256.193 kb on - strand, within MPMX19_06977at 256.193 kb on - strand, within MPMX19_06977at 256.726 kb on + strand, within MPMX19_06977at 256.726 kb on + strand, within MPMX19_06977at 256.726 kb on + strand, within MPMX19_06977at 256.726 kb on + strand, within MPMX19_06977at 256.727 kb on - strand, within MPMX19_06977at 256.727 kb on - strand, within MPMX19_06977at 256.727 kb on - strand, within MPMX19_06977at 256.766 kb on - strand, within MPMX19_06977at 257.299 kb on + strand, within MPMX19_06977at 257.299 kb on + strand, within MPMX19_06977at 257.300 kb on - strand, within MPMX19_06977at 257.300 kb on - strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.635 kb on + strand, within MPMX19_06977at 257.636 kb on - strand, within MPMX19_06977at 257.676 kb on - strand, within MPMX19_06977at 257.707 kb on + strand, within MPMX19_06977at 257.707 kb on + strand, within MPMX19_06977at 257.707 kb on + strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.708 kb on - strand, within MPMX19_06977at 257.992 kb on + strandat 258.029 kb on + strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.030 kb on - strandat 258.148 kb on + strandat 258.149 kb on - strandat 258.682 kb on + strand, within MPMX19_06978at 258.683 kb on - strand, within MPMX19_06978at 258.683 kb on - strand, within MPMX19_06978at 258.683 kb on - strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.835 kb on + strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.836 kb on - strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.838 kb on + strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.839 kb on - strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.841 kb on + strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.842 kb on - strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.922 kb on + strand, within MPMX19_06978at 258.923 kb on - strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.958 kb on + strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978at 258.959 kb on - strand, within MPMX19_06978

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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254,489 + MPMX19_06976 0.55 -1.6
254,930 + MPMX19_06976 0.81 -0.3
254,930 + MPMX19_06976 0.81 -0.7
254,930 + MPMX19_06976 0.81 -0.5
254,931 - MPMX19_06976 0.81 -0.0
254,931 - MPMX19_06976 0.81 -0.8
255,035 + MPMX19_06976 0.87 +0.3
255,035 + MPMX19_06976 0.87 -2.0
255,035 + MPMX19_06976 0.87 -0.5
255,035 + MPMX19_06976 0.87 +0.2
255,036 - MPMX19_06976 0.87 -0.9
255,036 - MPMX19_06976 0.87 -1.9
255,036 - MPMX19_06976 0.87 -0.3
255,279 + -1.0
255,281 + -0.9
255,281 + +3.1
255,281 + -0.9
255,281 + -0.5
255,282 - -1.8
255,538 + -0.0
255,538 + -1.1
255,538 + -1.3
255,538 + -0.3
255,539 - -0.8
255,539 - -2.8
255,640 + MPMX19_06977 0.11 -0.1
255,640 + MPMX19_06977 0.11 +0.1
255,640 + MPMX19_06977 0.11 -0.0
255,640 + MPMX19_06977 0.11 +0.3
255,640 + MPMX19_06977 0.11 -0.8
255,640 + MPMX19_06977 0.11 -0.5
255,640 + MPMX19_06977 0.11 -1.4
255,640 + MPMX19_06977 0.11 -0.8
255,641 - MPMX19_06977 0.11 -0.5
255,641 - MPMX19_06977 0.11 +1.1
255,641 - MPMX19_06977 0.11 +0.5
255,641 - MPMX19_06977 0.11 +1.5
255,641 - MPMX19_06977 0.11 -0.3
255,641 - MPMX19_06977 0.11 +0.5
255,709 + MPMX19_06977 0.14 +0.5
255,710 - MPMX19_06977 0.14 +0.2
255,908 - MPMX19_06977 0.21 -1.5
255,908 - MPMX19_06977 0.21 -1.8
256,165 + MPMX19_06977 0.31 -1.0
256,165 + MPMX19_06977 0.31 -1.3
256,165 + MPMX19_06977 0.31 -1.3
256,166 - MPMX19_06977 0.31 -0.0
256,166 - MPMX19_06977 0.31 -0.2
256,185 + MPMX19_06977 0.31 -0.0
256,186 - MPMX19_06977 0.31 +1.1
256,192 + MPMX19_06977 0.32 +0.5
256,193 - MPMX19_06977 0.32 -0.8
256,193 - MPMX19_06977 0.32 -0.5
256,726 + MPMX19_06977 0.51 -1.1
256,726 + MPMX19_06977 0.51 -1.0
256,726 + MPMX19_06977 0.51 -0.8
256,726 + MPMX19_06977 0.51 +1.5
256,727 - MPMX19_06977 0.52 -0.2
256,727 - MPMX19_06977 0.52 -1.0
256,727 - MPMX19_06977 0.52 +1.0
256,766 - MPMX19_06977 0.53 +0.1
257,299 + MPMX19_06977 0.73 -0.2
257,299 + MPMX19_06977 0.73 +0.5
257,300 - MPMX19_06977 0.73 -0.0
257,300 - MPMX19_06977 0.73 -1.2
257,635 + MPMX19_06977 0.85 +0.7
257,635 + MPMX19_06977 0.85 -0.5
257,635 + MPMX19_06977 0.85 -0.2
257,635 + MPMX19_06977 0.85 -1.0
257,635 + MPMX19_06977 0.85 -0.9
257,636 - MPMX19_06977 0.85 -0.0
257,676 - MPMX19_06977 0.87 +0.5
257,707 + MPMX19_06977 0.88 -1.0
257,707 + MPMX19_06977 0.88 +0.7
257,707 + MPMX19_06977 0.88 -0.8
257,708 - MPMX19_06977 0.88 +0.1
257,708 - MPMX19_06977 0.88 -0.3
257,708 - MPMX19_06977 0.88 -2.0
257,708 - MPMX19_06977 0.88 -0.6
257,992 + -0.0
258,029 + +0.4
258,030 - -0.0
258,030 - +0.3
258,030 - -0.5
258,030 - +0.1
258,030 - +0.1
258,148 + +0.2
258,149 - +0.2
258,682 + MPMX19_06978 0.13 +0.7
258,683 - MPMX19_06978 0.13 -0.2
258,683 - MPMX19_06978 0.13 -2.8
258,683 - MPMX19_06978 0.13 +0.5
258,835 + MPMX19_06978 0.27 +0.7
258,835 + MPMX19_06978 0.27 +1.9
258,835 + MPMX19_06978 0.27 +1.3
258,835 + MPMX19_06978 0.27 -0.8
258,835 + MPMX19_06978 0.27 -1.6
258,835 + MPMX19_06978 0.27 -1.2
258,835 + MPMX19_06978 0.27 -0.8
258,836 - MPMX19_06978 0.27 +0.5
258,836 - MPMX19_06978 0.27 -0.2
258,836 - MPMX19_06978 0.27 +0.1
258,836 - MPMX19_06978 0.27 +0.2
258,836 - MPMX19_06978 0.27 -0.8
258,836 - MPMX19_06978 0.27 -1.7
258,838 + MPMX19_06978 0.27 -0.8
258,838 + MPMX19_06978 0.27 +0.5
258,838 + MPMX19_06978 0.27 -1.3
258,838 + MPMX19_06978 0.27 -0.4
258,838 + MPMX19_06978 0.27 -1.6
258,838 + MPMX19_06978 0.27 -0.2
258,838 + MPMX19_06978 0.27 +2.8
258,838 + MPMX19_06978 0.27 -0.7
258,839 - MPMX19_06978 0.27 -1.3
258,839 - MPMX19_06978 0.27 -1.3
258,839 - MPMX19_06978 0.27 -1.3
258,839 - MPMX19_06978 0.27 -0.5
258,841 + MPMX19_06978 0.27 -0.2
258,841 + MPMX19_06978 0.27 +0.5
258,841 + MPMX19_06978 0.27 +0.8
258,841 + MPMX19_06978 0.27 -2.9
258,841 + MPMX19_06978 0.27 -0.8
258,841 + MPMX19_06978 0.27 -1.8
258,841 + MPMX19_06978 0.27 +0.2
258,841 + MPMX19_06978 0.27 +0.8
258,841 + MPMX19_06978 0.27 +0.4
258,841 + MPMX19_06978 0.27 -1.3
258,841 + MPMX19_06978 0.27 -0.3
258,841 + MPMX19_06978 0.27 +1.1
258,841 + MPMX19_06978 0.27 +0.5
258,842 - MPMX19_06978 0.27 -0.6
258,842 - MPMX19_06978 0.27 +0.5
258,842 - MPMX19_06978 0.27 -0.6
258,842 - MPMX19_06978 0.27 +0.2
258,842 - MPMX19_06978 0.27 -0.2
258,842 - MPMX19_06978 0.27 -0.0
258,842 - MPMX19_06978 0.27 -0.8
258,842 - MPMX19_06978 0.27 -1.3
258,842 - MPMX19_06978 0.27 -1.5
258,842 - MPMX19_06978 0.27 -1.5
258,842 - MPMX19_06978 0.27 -0.0
258,842 - MPMX19_06978 0.27 +0.2
258,922 + MPMX19_06978 0.35 -0.0
258,922 + MPMX19_06978 0.35 -0.1
258,922 + MPMX19_06978 0.35 -0.6
258,923 - MPMX19_06978 0.35 -0.0
258,958 + MPMX19_06978 0.38 -0.8
258,958 + MPMX19_06978 0.38 +0.5
258,958 + MPMX19_06978 0.38 -1.4
258,959 - MPMX19_06978 0.38 +2.1
258,959 - MPMX19_06978 0.38 -0.0
258,959 - MPMX19_06978 0.38 +0.2

Or see this region's nucleotide sequence