Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06873

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06871 and MPMX19_06872 are separated by 1 nucleotidesMPMX19_06872 and MPMX19_06873 are separated by 32 nucleotidesMPMX19_06873 and MPMX19_06874 are separated by 113 nucleotidesMPMX19_06874 and MPMX19_06875 overlap by 8 nucleotides MPMX19_06871: MPMX19_06871 - Long-chain-fatty-acid--CoA ligase FadD15, at 141,628 to 143,538 _06871 MPMX19_06872: MPMX19_06872 - Short-chain-enoyl-CoA hydratase, at 143,540 to 144,328 _06872 MPMX19_06873: MPMX19_06873 - F420-dependent glucose-6-phosphate dehydrogenase, at 144,361 to 145,500 _06873 MPMX19_06874: MPMX19_06874 - hypothetical protein, at 145,614 to 146,402 _06874 MPMX19_06875: MPMX19_06875 - Carnitinyl-CoA dehydratase, at 146,395 to 147,159 _06875 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1at 143.460 kb on - strandat 143.460 kb on - strandat 143.460 kb on - strandat 143.691 kb on + strand, within MPMX19_06872at 143.691 kb on + strand, within MPMX19_06872at 143.691 kb on + strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.692 kb on - strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.844 kb on + strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 143.845 kb on - strand, within MPMX19_06872at 144.310 kb on + strandat 144.310 kb on + strandat 144.311 kb on - strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.312 kb on + strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.313 kb on - strandat 144.461 kb on + strandat 144.461 kb on + strandat 144.461 kb on + strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.462 kb on - strandat 144.620 kb on + strand, within MPMX19_06873at 144.620 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.678 kb on - strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.732 kb on - strand, within MPMX19_06873at 144.732 kb on - strand, within MPMX19_06873at 144.752 kb on + strand, within MPMX19_06873at 144.752 kb on + strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.986 kb on + strand, within MPMX19_06873at 145.034 kb on + strand, within MPMX19_06873at 145.175 kb on + strand, within MPMX19_06873at 145.175 kb on + strand, within MPMX19_06873at 145.176 kb on - strand, within MPMX19_06873at 145.176 kb on - strand, within MPMX19_06873at 145.311 kb on - strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.822 kb on + strand, within MPMX19_06874at 145.822 kb on + strand, within MPMX19_06874at 145.822 kb on + strand, within MPMX19_06874at 145.822 kb on + strand, within MPMX19_06874at 146.104 kb on + strand, within MPMX19_06874at 146.104 kb on + strand, within MPMX19_06874at 146.104 kb on + strand, within MPMX19_06874at 146.105 kb on - strand, within MPMX19_06874

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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143,460 - -1.9
143,460 - +1.7
143,460 - -2.3
143,691 + MPMX19_06872 0.19 -1.5
143,691 + MPMX19_06872 0.19 -0.8
143,691 + MPMX19_06872 0.19 -0.6
143,692 - MPMX19_06872 0.19 +0.3
143,692 - MPMX19_06872 0.19 -0.3
143,692 - MPMX19_06872 0.19 +1.0
143,692 - MPMX19_06872 0.19 -0.6
143,692 - MPMX19_06872 0.19 +0.5
143,844 + MPMX19_06872 0.39 +0.5
143,844 + MPMX19_06872 0.39 -1.2
143,844 + MPMX19_06872 0.39 +1.1
143,844 + MPMX19_06872 0.39 +1.0
143,845 - MPMX19_06872 0.39 +0.2
143,845 - MPMX19_06872 0.39 -1.3
143,845 - MPMX19_06872 0.39 -0.3
143,845 - MPMX19_06872 0.39 -1.0
143,845 - MPMX19_06872 0.39 +0.7
143,845 - MPMX19_06872 0.39 +1.1
144,310 + -1.0
144,310 + -0.1
144,311 - -2.4
144,312 + -2.2
144,312 + +0.4
144,312 + -0.8
144,312 + -0.3
144,313 - +0.7
144,313 - -1.0
144,313 - -1.0
144,313 - -2.0
144,313 - -0.0
144,461 + -1.0
144,461 + -0.0
144,461 + -1.1
144,462 - -1.3
144,462 - -0.7
144,462 - -0.5
144,462 - +1.5
144,620 + MPMX19_06873 0.23 -1.3
144,620 + MPMX19_06873 0.23 -0.3
144,671 + MPMX19_06873 0.27 -1.7
144,671 + MPMX19_06873 0.27 -1.3
144,671 + MPMX19_06873 0.27 -1.6
144,671 + MPMX19_06873 0.27 -0.3
144,671 + MPMX19_06873 0.27 -0.5
144,671 + MPMX19_06873 0.27 -0.0
144,672 - MPMX19_06873 0.27 +0.2
144,672 - MPMX19_06873 0.27 -1.9
144,672 - MPMX19_06873 0.27 -1.4
144,672 - MPMX19_06873 0.27 -0.3
144,672 - MPMX19_06873 0.27 -1.3
144,672 - MPMX19_06873 0.27 -0.3
144,672 - MPMX19_06873 0.27 -0.5
144,677 + MPMX19_06873 0.28 -0.5
144,677 + MPMX19_06873 0.28 +0.3
144,677 + MPMX19_06873 0.28 -0.0
144,677 + MPMX19_06873 0.28 -0.5
144,678 - MPMX19_06873 0.28 -1.5
144,731 + MPMX19_06873 0.32 +0.7
144,731 + MPMX19_06873 0.32 -1.0
144,731 + MPMX19_06873 0.32 -1.5
144,731 + MPMX19_06873 0.32 -1.6
144,732 - MPMX19_06873 0.33 +0.1
144,732 - MPMX19_06873 0.33 -1.9
144,752 + MPMX19_06873 0.34 -0.5
144,752 + MPMX19_06873 0.34 -0.0
144,753 - MPMX19_06873 0.34 +0.3
144,753 - MPMX19_06873 0.34 -0.5
144,753 - MPMX19_06873 0.34 -1.5
144,753 - MPMX19_06873 0.34 -0.9
144,900 - MPMX19_06873 0.47 -0.0
144,900 - MPMX19_06873 0.47 -0.0
144,900 - MPMX19_06873 0.47 -1.3
144,986 + MPMX19_06873 0.55 -0.0
145,034 + MPMX19_06873 0.59 +0.2
145,175 + MPMX19_06873 0.71 -0.8
145,175 + MPMX19_06873 0.71 -0.0
145,176 - MPMX19_06873 0.71 +1.5
145,176 - MPMX19_06873 0.71 -0.3
145,311 - MPMX19_06873 0.83 -0.5
145,316 + MPMX19_06873 0.84 -1.5
145,316 + MPMX19_06873 0.84 -0.0
145,316 + MPMX19_06873 0.84 -0.7
145,317 - MPMX19_06873 0.84 +0.8
145,317 - MPMX19_06873 0.84 -1.0
145,317 - MPMX19_06873 0.84 -1.0
145,317 - MPMX19_06873 0.84 +0.9
145,822 + MPMX19_06874 0.26 -1.4
145,822 + MPMX19_06874 0.26 -0.6
145,822 + MPMX19_06874 0.26 -0.9
145,822 + MPMX19_06874 0.26 -1.5
146,104 + MPMX19_06874 0.62 -1.0
146,104 + MPMX19_06874 0.62 -0.5
146,104 + MPMX19_06874 0.62 -0.5
146,105 - MPMX19_06874 0.62 -0.9

Or see this region's nucleotide sequence