Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06850

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06849 and MPMX19_06850 are separated by 42 nucleotidesMPMX19_06850 and MPMX19_06851 are separated by 27 nucleotides MPMX19_06849: MPMX19_06849 - Glutarate-semialdehyde dehydrogenase, at 116,853 to 118,310 _06849 MPMX19_06850: MPMX19_06850 - putative tartrate dehydrogenase/decarboxylase TtuC', at 118,353 to 119,396 _06850 MPMX19_06851: MPMX19_06851 - NADP/NAD-dependent aldehyde dehydrogenase PuuC, at 119,424 to 120,896 _06851 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.400 kb on + strand, within MPMX19_06849at 117.400 kb on + strand, within MPMX19_06849at 117.401 kb on - strand, within MPMX19_06849at 117.745 kb on + strand, within MPMX19_06849at 117.746 kb on - strand, within MPMX19_06849at 117.973 kb on + strand, within MPMX19_06849at 118.753 kb on + strand, within MPMX19_06850at 118.753 kb on + strand, within MPMX19_06850at 118.753 kb on + strand, within MPMX19_06850at 118.754 kb on - strand, within MPMX19_06850at 118.994 kb on - strand, within MPMX19_06850at 118.994 kb on - strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.095 kb on + strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.198 kb on - strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.251 kb on + strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.252 kb on - strand, within MPMX19_06850at 119.425 kb on + strandat 119.426 kb on - strandat 119.426 kb on - strandat 119.426 kb on - strandat 119.467 kb on + strandat 119.467 kb on + strandat 119.467 kb on + strandat 119.468 kb on - strandat 119.468 kb on - strandat 119.468 kb on - strandat 119.509 kb on + strandat 119.510 kb on - strandat 119.548 kb on + strandat 119.620 kb on + strand, within MPMX19_06851at 119.621 kb on - strand, within MPMX19_06851at 119.621 kb on - strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.641 kb on + strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.642 kb on - strand, within MPMX19_06851at 119.774 kb on - strand, within MPMX19_06851at 119.774 kb on - strand, within MPMX19_06851at 119.779 kb on + strand, within MPMX19_06851at 119.779 kb on + strand, within MPMX19_06851at 119.779 kb on + strand, within MPMX19_06851at 119.780 kb on - strand, within MPMX19_06851at 119.893 kb on + strand, within MPMX19_06851

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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117,400 + MPMX19_06849 0.38 -0.2
117,400 + MPMX19_06849 0.38 -1.0
117,401 - MPMX19_06849 0.38 -0.6
117,745 + MPMX19_06849 0.61 +0.8
117,746 - MPMX19_06849 0.61 +0.2
117,973 + MPMX19_06849 0.77 -0.8
118,753 + MPMX19_06850 0.38 -2.0
118,753 + MPMX19_06850 0.38 -1.5
118,753 + MPMX19_06850 0.38 -1.8
118,754 - MPMX19_06850 0.38 +0.5
118,994 - MPMX19_06850 0.61 -0.6
118,994 - MPMX19_06850 0.61 -1.7
119,095 + MPMX19_06850 0.71 -1.0
119,095 + MPMX19_06850 0.71 +0.5
119,095 + MPMX19_06850 0.71 +1.0
119,095 + MPMX19_06850 0.71 -1.3
119,095 + MPMX19_06850 0.71 -2.3
119,095 + MPMX19_06850 0.71 +0.4
119,198 - MPMX19_06850 0.81 -1.0
119,198 - MPMX19_06850 0.81 -0.0
119,198 - MPMX19_06850 0.81 -0.5
119,251 + MPMX19_06850 0.86 -1.8
119,251 + MPMX19_06850 0.86 +1.5
119,251 + MPMX19_06850 0.86 +1.0
119,251 + MPMX19_06850 0.86 -0.2
119,251 + MPMX19_06850 0.86 -2.3
119,252 - MPMX19_06850 0.86 -2.2
119,252 - MPMX19_06850 0.86 +0.4
119,252 - MPMX19_06850 0.86 +0.4
119,252 - MPMX19_06850 0.86 -1.6
119,252 - MPMX19_06850 0.86 -0.2
119,252 - MPMX19_06850 0.86 -0.8
119,425 + -0.6
119,426 - +1.1
119,426 - -0.5
119,426 - +0.1
119,467 + +0.5
119,467 + -1.6
119,467 + -0.5
119,468 - -0.9
119,468 - -1.8
119,468 - -0.8
119,509 + -1.0
119,510 - -1.6
119,548 + -0.0
119,620 + MPMX19_06851 0.13 -0.3
119,621 - MPMX19_06851 0.13 -0.5
119,621 - MPMX19_06851 0.13 -0.5
119,641 + MPMX19_06851 0.15 +1.0
119,641 + MPMX19_06851 0.15 -0.0
119,641 + MPMX19_06851 0.15 +2.0
119,641 + MPMX19_06851 0.15 -0.0
119,641 + MPMX19_06851 0.15 -2.5
119,641 + MPMX19_06851 0.15 +0.8
119,642 - MPMX19_06851 0.15 +2.1
119,642 - MPMX19_06851 0.15 -0.7
119,642 - MPMX19_06851 0.15 +0.5
119,642 - MPMX19_06851 0.15 -1.1
119,642 - MPMX19_06851 0.15 -0.9
119,774 - MPMX19_06851 0.24 -2.3
119,774 - MPMX19_06851 0.24 -1.6
119,779 + MPMX19_06851 0.24 +1.0
119,779 + MPMX19_06851 0.24 -0.6
119,779 + MPMX19_06851 0.24 -3.0
119,780 - MPMX19_06851 0.24 -2.5
119,893 + MPMX19_06851 0.32 -0.0

Or see this region's nucleotide sequence