Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06763 and MPMX19_06764 are separated by 124 nucleotides MPMX19_06764 and MPMX19_06765 are separated by 41 nucleotides MPMX19_06765 and MPMX19_06766 are separated by 222 nucleotides
MPMX19_06763: MPMX19_06763 - hypothetical protein, at 29,342 to 30,259
_06763
MPMX19_06764: MPMX19_06764 - hypothetical protein, at 30,384 to 31,058
_06764
MPMX19_06765: MPMX19_06765 - Hydrogen peroxide-inducible genes activator, at 31,100 to 32,032
_06765
MPMX19_06766: MPMX19_06766 - Bicarbonate transport ATP-binding protein CmpC, at 32,255 to 33,187
_06766
Position (kb) 31
32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 30.305 kb on + strand at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.585 kb on + strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.586 kb on - strand, within MPMX19_06764 at 30.645 kb on + strand, within MPMX19_06764 at 30.645 kb on + strand, within MPMX19_06764 at 30.645 kb on + strand, within MPMX19_06764 at 30.645 kb on + strand, within MPMX19_06764 at 30.645 kb on + strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.646 kb on - strand, within MPMX19_06764 at 30.918 kb on + strand, within MPMX19_06764 at 30.919 kb on - strand, within MPMX19_06764 at 30.919 kb on - strand, within MPMX19_06764 at 30.919 kb on - strand, within MPMX19_06764 at 30.919 kb on - strand, within MPMX19_06764 at 30.919 kb on - strand, within MPMX19_06764 at 30.996 kb on + strand at 30.997 kb on - strand at 31.593 kb on + strand, within MPMX19_06765 at 31.594 kb on - strand, within MPMX19_06765 at 31.594 kb on - strand, within MPMX19_06765 at 32.136 kb on + strand at 32.136 kb on + strand at 32.137 kb on - strand at 32.137 kb on - strand at 32.137 kb on - strand at 32.160 kb on + strand at 32.160 kb on + strand at 32.160 kb on + strand at 32.161 kb on - strand at 32.265 kb on + strand at 32.265 kb on + strand at 32.265 kb on + strand at 32.266 kb on - strand at 32.435 kb on + strand, within MPMX19_06766
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 30,305 + -0.2 30,585 + MPMX19_06764 0.30 -2.2 30,585 + MPMX19_06764 0.30 -0.8 30,585 + MPMX19_06764 0.30 +0.8 30,585 + MPMX19_06764 0.30 -0.5 30,585 + MPMX19_06764 0.30 -0.0 30,585 + MPMX19_06764 0.30 -0.0 30,585 + MPMX19_06764 0.30 -0.0 30,585 + MPMX19_06764 0.30 -0.0 30,585 + MPMX19_06764 0.30 +0.5 30,585 + MPMX19_06764 0.30 +0.5 30,586 - MPMX19_06764 0.30 -1.3 30,586 - MPMX19_06764 0.30 +1.1 30,586 - MPMX19_06764 0.30 -1.5 30,586 - MPMX19_06764 0.30 -2.2 30,586 - MPMX19_06764 0.30 +0.2 30,586 - MPMX19_06764 0.30 -0.5 30,586 - MPMX19_06764 0.30 +1.0 30,645 + MPMX19_06764 0.39 -0.5 30,645 + MPMX19_06764 0.39 -0.8 30,645 + MPMX19_06764 0.39 -0.2 30,645 + MPMX19_06764 0.39 -0.0 30,645 + MPMX19_06764 0.39 -1.6 30,646 - MPMX19_06764 0.39 -1.0 30,646 - MPMX19_06764 0.39 +0.5 30,646 - MPMX19_06764 0.39 -1.8 30,646 - MPMX19_06764 0.39 -0.9 30,646 - MPMX19_06764 0.39 -0.8 30,646 - MPMX19_06764 0.39 -0.5 30,646 - MPMX19_06764 0.39 +1.3 30,646 - MPMX19_06764 0.39 -1.3 30,646 - MPMX19_06764 0.39 -1.6 30,646 - MPMX19_06764 0.39 -1.0 30,646 - MPMX19_06764 0.39 -0.5 30,918 + MPMX19_06764 0.79 -0.5 30,919 - MPMX19_06764 0.79 -0.5 30,919 - MPMX19_06764 0.79 -1.6 30,919 - MPMX19_06764 0.79 +1.1 30,919 - MPMX19_06764 0.79 -0.5 30,919 - MPMX19_06764 0.79 -0.6 30,996 + -0.8 30,997 - -1.3 31,593 + MPMX19_06765 0.53 -1.6 31,594 - MPMX19_06765 0.53 -1.9 31,594 - MPMX19_06765 0.53 -2.8 32,136 + -1.0 32,136 + -0.6 32,137 - +1.5 32,137 - +0.6 32,137 - -0.5 32,160 + -0.0 32,160 + +1.1 32,160 + -0.3 32,161 - -1.0 32,265 + -0.5 32,265 + -1.5 32,265 + -1.2 32,266 - -1.5 32,435 + MPMX19_06766 0.19 -0.0
Or see this region's nucleotide sequence