Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06517 and MPMX19_06518 overlap by 20 nucleotides MPMX19_06518 and MPMX19_06519 are separated by 31 nucleotides MPMX19_06519 and MPMX19_06520 are separated by 204 nucleotides
MPMX19_06517: MPMX19_06517 - Vitamin B12 import ATP-binding protein BtuD, at 302,578 to 303,696
_06517
MPMX19_06518: MPMX19_06518 - Methionine import system permease protein MetP, at 303,677 to 304,333
_06518
MPMX19_06519: MPMX19_06519 - HTH-type transcriptional repressor NagR, at 304,365 to 305,084
_06519
MPMX19_06520: MPMX19_06520 - Nitrate import ATP-binding protein NrtC, at 305,289 to 306,131
_06520
Position (kb) 303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 302.698 kb on + strand, within MPMX19_06517 at 302.698 kb on + strand, within MPMX19_06517 at 302.698 kb on + strand, within MPMX19_06517 at 302.698 kb on + strand, within MPMX19_06517 at 302.698 kb on + strand, within MPMX19_06517 at 302.698 kb on + strand, within MPMX19_06517 at 302.699 kb on - strand, within MPMX19_06517 at 302.913 kb on + strand, within MPMX19_06517 at 302.913 kb on + strand, within MPMX19_06517 at 302.913 kb on + strand, within MPMX19_06517 at 302.913 kb on + strand, within MPMX19_06517 at 302.914 kb on - strand, within MPMX19_06517 at 302.914 kb on - strand, within MPMX19_06517 at 302.914 kb on - strand, within MPMX19_06517 at 303.067 kb on + strand, within MPMX19_06517 at 303.676 kb on + strand at 303.676 kb on + strand at 303.701 kb on + strand at 303.702 kb on - strand at 303.815 kb on + strand, within MPMX19_06518 at 303.816 kb on - strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.986 kb on + strand, within MPMX19_06518 at 303.987 kb on - strand, within MPMX19_06518 at 303.987 kb on - strand, within MPMX19_06518 at 304.218 kb on - strand, within MPMX19_06518 at 304.226 kb on + strand, within MPMX19_06518 at 304.226 kb on + strand, within MPMX19_06518 at 304.227 kb on - strand, within MPMX19_06518 at 304.227 kb on - strand, within MPMX19_06518 at 304.227 kb on - strand, within MPMX19_06518 at 304.227 kb on - strand, within MPMX19_06518 at 304.227 kb on - strand, within MPMX19_06518 at 304.227 kb on - strand, within MPMX19_06518 at 304.367 kb on - strand at 304.399 kb on + strand at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 305.050 kb on + strand at 305.050 kb on + strand at 305.177 kb on + strand at 305.178 kb on - strand at 305.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 302,698 + MPMX19_06517 0.11 -0.8 302,698 + MPMX19_06517 0.11 -0.5 302,698 + MPMX19_06517 0.11 -1.4 302,698 + MPMX19_06517 0.11 -0.6 302,698 + MPMX19_06517 0.11 -1.2 302,698 + MPMX19_06517 0.11 -0.9 302,699 - MPMX19_06517 0.11 +0.5 302,913 + MPMX19_06517 0.30 -1.4 302,913 + MPMX19_06517 0.30 -0.2 302,913 + MPMX19_06517 0.30 +1.0 302,913 + MPMX19_06517 0.30 -0.2 302,914 - MPMX19_06517 0.30 +0.3 302,914 - MPMX19_06517 0.30 -1.3 302,914 - MPMX19_06517 0.30 -0.9 303,067 + MPMX19_06517 0.44 -0.6 303,676 + -0.0 303,676 + -1.2 303,701 + -1.1 303,702 - +1.4 303,815 + MPMX19_06518 0.21 -1.2 303,816 - MPMX19_06518 0.21 -1.9 303,986 + MPMX19_06518 0.47 -0.9 303,986 + MPMX19_06518 0.47 -1.6 303,986 + MPMX19_06518 0.47 +0.1 303,986 + MPMX19_06518 0.47 +3.0 303,986 + MPMX19_06518 0.47 +0.7 303,986 + MPMX19_06518 0.47 -2.2 303,986 + MPMX19_06518 0.47 -0.6 303,987 - MPMX19_06518 0.47 -1.0 303,987 - MPMX19_06518 0.47 -2.0 304,218 - MPMX19_06518 0.82 -1.4 304,226 + MPMX19_06518 0.84 -1.3 304,226 + MPMX19_06518 0.84 -0.0 304,227 - MPMX19_06518 0.84 +1.4 304,227 - MPMX19_06518 0.84 -1.2 304,227 - MPMX19_06518 0.84 +0.4 304,227 - MPMX19_06518 0.84 -1.9 304,227 - MPMX19_06518 0.84 -1.2 304,227 - MPMX19_06518 0.84 -2.6 304,367 - -0.9 304,399 + -0.5 304,597 + MPMX19_06519 0.32 -0.8 304,597 + MPMX19_06519 0.32 -0.8 304,597 + MPMX19_06519 0.32 +0.4 304,597 + MPMX19_06519 0.32 -0.2 305,050 + -0.6 305,050 + +3.0 305,177 + -0.6 305,178 - -1.1 305,178 - -1.2
Or see this region's nucleotide sequence