Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06471

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06469 and MPMX19_06470 are separated by 37 nucleotidesMPMX19_06470 and MPMX19_06471 are separated by 155 nucleotidesMPMX19_06471 and MPMX19_06472 are separated by 7 nucleotides MPMX19_06469: MPMX19_06469 - hypothetical protein, at 253,004 to 254,002 _06469 MPMX19_06470: MPMX19_06470 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 254,040 to 254,825 _06470 MPMX19_06471: MPMX19_06471 - Glyoxylate/hydroxypyruvate reductase A, at 254,981 to 255,811 _06471 MPMX19_06472: MPMX19_06472 - Alkanesulfonate monooxygenase, at 255,819 to 256,943 _06472 Position (kb) 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.356 kb on + strand, within MPMX19_06470at 254.356 kb on + strand, within MPMX19_06470at 254.356 kb on + strand, within MPMX19_06470at 254.357 kb on - strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.450 kb on - strand, within MPMX19_06470at 254.450 kb on - strand, within MPMX19_06470at 254.857 kb on + strandat 254.906 kb on - strandat 254.906 kb on - strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.003 kb on + strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.004 kb on - strandat 255.173 kb on + strand, within MPMX19_06471at 255.173 kb on + strand, within MPMX19_06471at 255.174 kb on - strand, within MPMX19_06471at 255.174 kb on - strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.486 kb on + strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.487 kb on - strand, within MPMX19_06471at 255.510 kb on - strand, within MPMX19_06471at 255.561 kb on + strand, within MPMX19_06471at 255.577 kb on + strand, within MPMX19_06471at 255.577 kb on + strand, within MPMX19_06471at 255.896 kb on - strandat 256.174 kb on + strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.175 kb on - strand, within MPMX19_06472at 256.182 kb on - strand, within MPMX19_06472at 256.230 kb on + strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.231 kb on - strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.336 kb on + strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.337 kb on - strand, within MPMX19_06472at 256.418 kb on - strand, within MPMX19_06472at 256.534 kb on + strand, within MPMX19_06472

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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254,099 - -0.6
254,099 - -0.2
254,099 - +1.0
254,099 - -1.4
254,099 - -0.4
254,099 - -0.9
254,356 + MPMX19_06470 0.40 -1.4
254,356 + MPMX19_06470 0.40 -0.7
254,356 + MPMX19_06470 0.40 -1.8
254,357 - MPMX19_06470 0.40 +1.4
254,383 + MPMX19_06470 0.44 +0.1
254,383 + MPMX19_06470 0.44 -0.2
254,383 + MPMX19_06470 0.44 +1.4
254,384 - MPMX19_06470 0.44 +0.7
254,384 - MPMX19_06470 0.44 +1.1
254,384 - MPMX19_06470 0.44 +0.4
254,450 - MPMX19_06470 0.52 +1.4
254,450 - MPMX19_06470 0.52 -0.2
254,857 + -0.6
254,906 - +0.1
254,906 - -0.8
255,003 + +1.4
255,003 + -0.2
255,003 + +1.8
255,003 + -2.0
255,003 + -0.2
255,003 + -0.9
255,003 + -0.2
255,003 + -1.2
255,003 + -0.6
255,003 + -0.2
255,004 - +0.3
255,004 - +1.2
255,004 - -2.2
255,004 - -1.4
255,004 - -0.0
255,004 - -1.4
255,004 - +0.1
255,004 - -0.6
255,173 + MPMX19_06471 0.23 -0.6
255,173 + MPMX19_06471 0.23 -0.9
255,174 - MPMX19_06471 0.23 +1.4
255,174 - MPMX19_06471 0.23 +0.4
255,486 + MPMX19_06471 0.61 -0.8
255,486 + MPMX19_06471 0.61 -1.8
255,486 + MPMX19_06471 0.61 -1.4
255,487 - MPMX19_06471 0.61 -1.8
255,487 - MPMX19_06471 0.61 -0.9
255,487 - MPMX19_06471 0.61 +1.0
255,510 - MPMX19_06471 0.64 -0.9
255,561 + MPMX19_06471 0.70 -0.4
255,577 + MPMX19_06471 0.72 -1.6
255,577 + MPMX19_06471 0.72 +0.1
255,896 - -1.9
256,174 + MPMX19_06472 0.32 -0.9
256,175 - MPMX19_06472 0.32 +1.4
256,175 - MPMX19_06472 0.32 +0.4
256,175 - MPMX19_06472 0.32 +1.4
256,182 - MPMX19_06472 0.32 +0.1
256,230 + MPMX19_06472 0.37 -0.7
256,231 - MPMX19_06472 0.37 -0.9
256,231 - MPMX19_06472 0.37 -0.6
256,231 - MPMX19_06472 0.37 -0.6
256,336 + MPMX19_06472 0.46 +0.1
256,336 + MPMX19_06472 0.46 -1.4
256,336 + MPMX19_06472 0.46 -0.9
256,336 + MPMX19_06472 0.46 -1.5
256,336 + MPMX19_06472 0.46 -0.0
256,336 + MPMX19_06472 0.46 -0.9
256,336 + MPMX19_06472 0.46 -0.9
256,337 - MPMX19_06472 0.46 -0.6
256,337 - MPMX19_06472 0.46 -0.3
256,337 - MPMX19_06472 0.46 -0.9
256,337 - MPMX19_06472 0.46 -0.2
256,337 - MPMX19_06472 0.46 -0.2
256,418 - MPMX19_06472 0.53 -1.7
256,534 + MPMX19_06472 0.64 -0.0

Or see this region's nucleotide sequence