Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06325 and MPMX19_06326 are separated by 212 nucleotides MPMX19_06326 and MPMX19_06327 are separated by 68 nucleotides MPMX19_06327 and MPMX19_06328 are separated by 71 nucleotides
MPMX19_06325: MPMX19_06325 - hypothetical protein, at 88,984 to 91,935
_06325
MPMX19_06326: MPMX19_06326 - hypothetical protein, at 92,148 to 92,888
_06326
MPMX19_06327: MPMX19_06327 - hypothetical protein, at 92,957 to 93,277
_06327
MPMX19_06328: MPMX19_06328 - hypothetical protein, at 93,349 to 94,791
_06328
Position (kb) 92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 91.303 kb on + strand, within MPMX19_06325 at 91.343 kb on + strand, within MPMX19_06325 at 91.343 kb on + strand, within MPMX19_06325 at 91.343 kb on + strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.344 kb on - strand, within MPMX19_06325 at 91.349 kb on + strand, within MPMX19_06325 at 91.350 kb on - strand, within MPMX19_06325 at 91.350 kb on - strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.351 kb on + strand, within MPMX19_06325 at 91.352 kb on - strand, within MPMX19_06325 at 91.352 kb on - strand, within MPMX19_06325 at 91.352 kb on - strand, within MPMX19_06325 at 91.352 kb on - strand, within MPMX19_06325 at 91.429 kb on - strand, within MPMX19_06325 at 91.715 kb on + strand at 91.715 kb on + strand at 91.716 kb on - strand at 91.716 kb on - strand at 91.716 kb on - strand at 91.961 kb on + strand at 91.962 kb on - strand at 91.962 kb on - strand at 91.969 kb on + strand at 91.970 kb on - strand at 91.970 kb on - strand at 91.970 kb on - strand at 91.971 kb on + strand at 92.059 kb on + strand at 92.060 kb on - strand at 92.060 kb on - strand at 92.060 kb on - strand at 92.060 kb on - strand at 92.095 kb on - strand at 92.115 kb on + strand at 92.115 kb on + strand at 92.193 kb on + strand at 92.193 kb on + strand at 92.193 kb on + strand at 92.193 kb on + strand at 92.194 kb on - strand at 92.194 kb on - strand at 92.194 kb on - strand at 92.194 kb on - strand at 92.194 kb on - strand at 92.194 kb on - strand at 92.200 kb on + strand at 92.200 kb on + strand at 92.201 kb on - strand at 92.201 kb on - strand at 92.243 kb on + strand, within MPMX19_06326 at 92.243 kb on + strand, within MPMX19_06326 at 92.243 kb on + strand, within MPMX19_06326 at 92.244 kb on - strand, within MPMX19_06326 at 92.244 kb on - strand, within MPMX19_06326 at 92.244 kb on - strand, within MPMX19_06326 at 92.244 kb on - strand, within MPMX19_06326 at 92.358 kb on + strand, within MPMX19_06326 at 92.359 kb on - strand, within MPMX19_06326 at 92.359 kb on - strand, within MPMX19_06326 at 92.359 kb on - strand, within MPMX19_06326 at 92.780 kb on + strand, within MPMX19_06326 at 92.919 kb on + strand at 92.957 kb on - strand at 92.986 kb on + strand at 93.125 kb on + strand, within MPMX19_06327 at 93.126 kb on - strand, within MPMX19_06327 at 93.126 kb on - strand, within MPMX19_06327 at 93.126 kb on - strand, within MPMX19_06327 at 93.328 kb on + strand at 93.328 kb on + strand at 93.328 kb on + strand at 93.328 kb on + strand at 93.329 kb on - strand at 93.329 kb on - strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.350 kb on + strand at 93.351 kb on - strand at 93.351 kb on - strand at 93.351 kb on - strand at 93.351 kb on - strand at 93.358 kb on - strand at 93.358 kb on - strand at 93.358 kb on - strand at 93.369 kb on + strand at 93.369 kb on + strand at 93.369 kb on + strand at 93.369 kb on + strand at 93.369 kb on + strand at 93.369 kb on + strand at 93.370 kb on - strand at 93.370 kb on - strand at 93.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 91,303 + MPMX19_06325 0.79 -0.2 91,343 + MPMX19_06325 0.80 -0.9 91,343 + MPMX19_06325 0.80 -1.2 91,343 + MPMX19_06325 0.80 +0.4 91,344 - MPMX19_06325 0.80 -0.6 91,344 - MPMX19_06325 0.80 +0.8 91,344 - MPMX19_06325 0.80 -0.0 91,344 - MPMX19_06325 0.80 +0.7 91,344 - MPMX19_06325 0.80 -1.4 91,344 - MPMX19_06325 0.80 -0.2 91,344 - MPMX19_06325 0.80 -0.6 91,349 + MPMX19_06325 0.80 +0.1 91,350 - MPMX19_06325 0.80 -0.3 91,350 - MPMX19_06325 0.80 -1.1 91,351 + MPMX19_06325 0.80 +0.1 91,351 + MPMX19_06325 0.80 -0.5 91,351 + MPMX19_06325 0.80 -0.7 91,351 + MPMX19_06325 0.80 -0.3 91,351 + MPMX19_06325 0.80 +0.2 91,351 + MPMX19_06325 0.80 +0.4 91,351 + MPMX19_06325 0.80 -0.9 91,351 + MPMX19_06325 0.80 +0.2 91,351 + MPMX19_06325 0.80 +0.4 91,351 + MPMX19_06325 0.80 -0.6 91,351 + MPMX19_06325 0.80 -0.9 91,352 - MPMX19_06325 0.80 -1.2 91,352 - MPMX19_06325 0.80 -0.4 91,352 - MPMX19_06325 0.80 +0.4 91,352 - MPMX19_06325 0.80 +1.4 91,429 - MPMX19_06325 0.83 -1.2 91,715 + -1.7 91,715 + -0.9 91,716 - +1.0 91,716 - -0.9 91,716 - +0.4 91,961 + -0.5 91,962 - +0.7 91,962 - +0.4 91,969 + -0.2 91,970 - +0.4 91,970 - -0.2 91,970 - -0.8 91,971 + -0.6 92,059 + -1.4 92,060 - -0.9 92,060 - -0.2 92,060 - -1.2 92,060 - -1.2 92,095 - -0.4 92,115 + -0.2 92,115 + -0.6 92,193 + -0.2 92,193 + -1.4 92,193 + +0.4 92,193 + -0.2 92,194 - -0.9 92,194 - +1.8 92,194 - +1.4 92,194 - -0.6 92,194 - -0.6 92,194 - -1.8 92,200 + -0.8 92,200 + +0.1 92,201 - -1.4 92,201 - -0.2 92,243 + MPMX19_06326 0.13 -1.4 92,243 + MPMX19_06326 0.13 -0.9 92,243 + MPMX19_06326 0.13 -0.6 92,244 - MPMX19_06326 0.13 -1.4 92,244 - MPMX19_06326 0.13 +1.4 92,244 - MPMX19_06326 0.13 -0.6 92,244 - MPMX19_06326 0.13 -1.0 92,358 + MPMX19_06326 0.28 -1.2 92,359 - MPMX19_06326 0.28 -1.2 92,359 - MPMX19_06326 0.28 -1.6 92,359 - MPMX19_06326 0.28 -0.6 92,780 + MPMX19_06326 0.85 -1.3 92,919 + -1.2 92,957 - -1.2 92,986 + -1.2 93,125 + MPMX19_06327 0.52 +0.1 93,126 - MPMX19_06327 0.53 -0.9 93,126 - MPMX19_06327 0.53 +0.7 93,126 - MPMX19_06327 0.53 -0.5 93,328 + -0.4 93,328 + -0.4 93,328 + -0.9 93,328 + +0.4 93,329 - -0.2 93,329 - -0.6 93,350 + -2.7 93,350 + +1.1 93,350 + -2.0 93,350 + -0.6 93,350 + -0.2 93,350 + +1.4 93,350 + +1.0 93,351 - -0.9 93,351 - -1.2 93,351 - -0.4 93,351 - -0.3 93,358 - -0.0 93,358 - -1.6 93,358 - +0.3 93,369 + +0.8 93,369 + -0.2 93,369 + -0.9 93,369 + +1.1 93,369 + -0.9 93,369 + -1.6 93,370 - -0.9 93,370 - +0.1 93,370 - -1.3
Or see this region's nucleotide sequence