Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06299

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06297 and MPMX19_06298 are separated by 75 nucleotidesMPMX19_06298 and MPMX19_06299 are separated by 210 nucleotidesMPMX19_06299 and MPMX19_06300 are separated by 94 nucleotides MPMX19_06297: MPMX19_06297 - hypothetical protein, at 64,207 to 64,494 _06297 MPMX19_06298: MPMX19_06298 - hypothetical protein, at 64,570 to 64,869 _06298 MPMX19_06299: MPMX19_06299 - hypothetical protein, at 65,080 to 65,271 _06299 MPMX19_06300: MPMX19_06300 - hypothetical protein, at 65,366 to 66,292 _06300 Position (kb) 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.091 kb on - strandat 64.095 kb on + strandat 64.096 kb on - strandat 64.421 kb on + strand, within MPMX19_06297at 64.422 kb on - strand, within MPMX19_06297at 64.489 kb on - strandat 64.525 kb on + strandat 64.526 kb on - strandat 64.609 kb on - strand, within MPMX19_06298at 64.632 kb on + strand, within MPMX19_06298at 64.632 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.766 kb on + strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.767 kb on - strand, within MPMX19_06298at 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.929 kb on + strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 64.930 kb on - strandat 65.101 kb on + strand, within MPMX19_06299at 65.129 kb on + strand, within MPMX19_06299at 65.129 kb on + strand, within MPMX19_06299at 65.130 kb on - strand, within MPMX19_06299at 65.130 kb on - strand, within MPMX19_06299at 65.130 kb on - strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.240 kb on + strand, within MPMX19_06299at 65.241 kb on - strand, within MPMX19_06299at 65.241 kb on - strand, within MPMX19_06299at 65.241 kb on - strand, within MPMX19_06299at 65.241 kb on - strand, within MPMX19_06299at 65.241 kb on - strand, within MPMX19_06299at 65.241 kb on - strand, within MPMX19_06299at 65.895 kb on + strand, within MPMX19_06300at 65.896 kb on - strand, within MPMX19_06300at 65.896 kb on - strand, within MPMX19_06300at 65.896 kb on - strand, within MPMX19_06300at 65.896 kb on - strand, within MPMX19_06300at 65.988 kb on + strand, within MPMX19_06300at 65.989 kb on - strand, within MPMX19_06300at 65.989 kb on - strand, within MPMX19_06300at 65.989 kb on - strand, within MPMX19_06300at 65.989 kb on - strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.015 kb on + strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.016 kb on - strand, within MPMX19_06300at 66.020 kb on + strand, within MPMX19_06300at 66.020 kb on + strand, within MPMX19_06300at 66.020 kb on + strand, within MPMX19_06300at 66.021 kb on - strand, within MPMX19_06300at 66.188 kb on + strand, within MPMX19_06300at 66.270 kb on + strandat 66.270 kb on + strandat 66.271 kb on - strandat 66.271 kb on - strandat 66.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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64,091 - -0.9
64,095 + +0.4
64,096 - -1.6
64,421 + MPMX19_06297 0.74 -0.9
64,422 - MPMX19_06297 0.75 +0.2
64,489 - -0.6
64,525 + +0.4
64,526 - -1.2
64,609 - MPMX19_06298 0.13 +0.4
64,632 + MPMX19_06298 0.21 -0.2
64,632 + MPMX19_06298 0.21 +1.4
64,766 + MPMX19_06298 0.65 +0.0
64,766 + MPMX19_06298 0.65 +2.0
64,766 + MPMX19_06298 0.65 +0.4
64,766 + MPMX19_06298 0.65 +1.0
64,766 + MPMX19_06298 0.65 +0.4
64,766 + MPMX19_06298 0.65 +0.8
64,766 + MPMX19_06298 0.65 -1.0
64,766 + MPMX19_06298 0.65 -0.5
64,766 + MPMX19_06298 0.65 +0.6
64,766 + MPMX19_06298 0.65 +0.4
64,766 + MPMX19_06298 0.65 -0.6
64,766 + MPMX19_06298 0.65 +0.8
64,766 + MPMX19_06298 0.65 -1.8
64,767 - MPMX19_06298 0.66 -0.3
64,767 - MPMX19_06298 0.66 -1.0
64,767 - MPMX19_06298 0.66 +0.6
64,767 - MPMX19_06298 0.66 +1.0
64,767 - MPMX19_06298 0.66 -1.6
64,767 - MPMX19_06298 0.66 -0.6
64,767 - MPMX19_06298 0.66 -0.2
64,767 - MPMX19_06298 0.66 -1.8
64,767 - MPMX19_06298 0.66 -1.6
64,767 - MPMX19_06298 0.66 -1.4
64,767 - MPMX19_06298 0.66 -2.1
64,767 - MPMX19_06298 0.66 +0.4
64,929 + -1.2
64,929 + -0.8
64,929 + -0.4
64,929 + -1.6
64,929 + -1.2
64,929 + -2.0
64,929 + -0.9
64,929 + +2.4
64,929 + -1.6
64,929 + -0.6
64,929 + +0.2
64,929 + -1.2
64,929 + -0.8
64,929 + -0.5
64,929 + -0.2
64,929 + -1.6
64,930 - -1.5
64,930 - -0.9
64,930 - -0.9
64,930 - +0.1
64,930 - -0.2
64,930 - +0.4
64,930 - +1.8
64,930 - -0.3
64,930 - +0.1
64,930 - -0.2
64,930 - -0.6
64,930 - -0.5
64,930 - +0.4
64,930 - -0.5
65,101 + MPMX19_06299 0.11 -0.8
65,129 + MPMX19_06299 0.26 +1.4
65,129 + MPMX19_06299 0.26 -0.8
65,130 - MPMX19_06299 0.26 -0.7
65,130 - MPMX19_06299 0.26 +0.1
65,130 - MPMX19_06299 0.26 +2.0
65,240 + MPMX19_06299 0.83 -0.4
65,240 + MPMX19_06299 0.83 -2.2
65,240 + MPMX19_06299 0.83 +1.4
65,240 + MPMX19_06299 0.83 +0.4
65,240 + MPMX19_06299 0.83 +0.2
65,240 + MPMX19_06299 0.83 +1.0
65,240 + MPMX19_06299 0.83 -0.9
65,240 + MPMX19_06299 0.83 -0.9
65,241 - MPMX19_06299 0.84 -0.6
65,241 - MPMX19_06299 0.84 -2.0
65,241 - MPMX19_06299 0.84 +0.4
65,241 - MPMX19_06299 0.84 +0.2
65,241 - MPMX19_06299 0.84 +0.1
65,241 - MPMX19_06299 0.84 +0.8
65,895 + MPMX19_06300 0.57 +0.1
65,896 - MPMX19_06300 0.57 -0.0
65,896 - MPMX19_06300 0.57 +1.0
65,896 - MPMX19_06300 0.57 -0.9
65,896 - MPMX19_06300 0.57 -0.4
65,988 + MPMX19_06300 0.67 -1.2
65,989 - MPMX19_06300 0.67 +0.5
65,989 - MPMX19_06300 0.67 +0.1
65,989 - MPMX19_06300 0.67 -1.8
65,989 - MPMX19_06300 0.67 -2.8
66,015 + MPMX19_06300 0.70 -0.4
66,015 + MPMX19_06300 0.70 -1.3
66,015 + MPMX19_06300 0.70 +0.4
66,015 + MPMX19_06300 0.70 -1.8
66,015 + MPMX19_06300 0.70 -0.0
66,015 + MPMX19_06300 0.70 -0.6
66,015 + MPMX19_06300 0.70 +1.8
66,015 + MPMX19_06300 0.70 +0.4
66,015 + MPMX19_06300 0.70 -1.0
66,015 + MPMX19_06300 0.70 -2.6
66,015 + MPMX19_06300 0.70 -1.0
66,015 + MPMX19_06300 0.70 -2.0
66,015 + MPMX19_06300 0.70 +0.4
66,015 + MPMX19_06300 0.70 -1.4
66,015 + MPMX19_06300 0.70 -0.2
66,015 + MPMX19_06300 0.70 +1.4
66,015 + MPMX19_06300 0.70 -0.0
66,015 + MPMX19_06300 0.70 +0.1
66,015 + MPMX19_06300 0.70 +0.4
66,015 + MPMX19_06300 0.70 -0.6
66,015 + MPMX19_06300 0.70 +1.4
66,015 + MPMX19_06300 0.70 +0.8
66,015 + MPMX19_06300 0.70 -1.5
66,016 - MPMX19_06300 0.70 -1.4
66,016 - MPMX19_06300 0.70 -1.0
66,016 - MPMX19_06300 0.70 -1.6
66,016 - MPMX19_06300 0.70 -0.1
66,016 - MPMX19_06300 0.70 -1.2
66,016 - MPMX19_06300 0.70 +0.9
66,016 - MPMX19_06300 0.70 -2.3
66,016 - MPMX19_06300 0.70 -0.9
66,016 - MPMX19_06300 0.70 +0.4
66,016 - MPMX19_06300 0.70 -1.2
66,016 - MPMX19_06300 0.70 -0.9
66,016 - MPMX19_06300 0.70 -0.3
66,016 - MPMX19_06300 0.70 -1.4
66,016 - MPMX19_06300 0.70 +0.1
66,016 - MPMX19_06300 0.70 -0.6
66,016 - MPMX19_06300 0.70 -0.9
66,016 - MPMX19_06300 0.70 +1.7
66,016 - MPMX19_06300 0.70 -0.7
66,016 - MPMX19_06300 0.70 +0.2
66,016 - MPMX19_06300 0.70 -0.7
66,020 + MPMX19_06300 0.71 -2.0
66,020 + MPMX19_06300 0.71 +0.4
66,020 + MPMX19_06300 0.71 -0.4
66,021 - MPMX19_06300 0.71 +0.2
66,188 + MPMX19_06300 0.89 -0.9
66,270 + -0.2
66,270 + -0.8
66,271 - -0.2
66,271 - -0.0
66,271 - -1.2

Or see this region's nucleotide sequence