Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06260 and MPMX19_06261 are separated by 166 nucleotides MPMX19_06261 and MPMX19_06262 are separated by 20 nucleotides MPMX19_06262 and MPMX19_06263 overlap by 4 nucleotides MPMX19_06263 and MPMX19_06264 are separated by 48 nucleotides
MPMX19_06260: MPMX19_06260 - hypothetical protein, at 12,727 to 13,389
_06260
MPMX19_06261: MPMX19_06261 - hypothetical protein, at 13,556 to 13,984
_06261
MPMX19_06262: MPMX19_06262 - hypothetical protein, at 14,005 to 14,142
_06262
MPMX19_06263: MPMX19_06263 - hypothetical protein, at 14,139 to 14,441
_06263
MPMX19_06264: MPMX19_06264 - hypothetical protein, at 14,490 to 15,215
_06264
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 13.259 kb on + strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.260 kb on - strand, within MPMX19_06260 at 13.260 kb on - strand, within MPMX19_06260 at 13.365 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.405 kb on + strand at 13.405 kb on + strand at 13.405 kb on + strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.410 kb on + strand at 13.411 kb on - strand at 13.411 kb on - strand at 13.411 kb on - strand at 13.415 kb on + strand at 13.416 kb on - strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.617 kb on + strand, within MPMX19_06261 at 13.617 kb on + strand, within MPMX19_06261 at 13.618 kb on - strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 14.007 kb on - strand at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.459 kb on + strand at 14.459 kb on + strand at 14.459 kb on + strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.460 kb on - strand at 14.460 kb on - strand at 14.479 kb on + strand at 14.479 kb on + strand at 14.480 kb on - strand at 14.648 kb on + strand, within MPMX19_06264 at 14.648 kb on + strand, within MPMX19_06264 at 14.649 kb on - strand, within MPMX19_06264 at 14.761 kb on + strand, within MPMX19_06264 at 14.761 kb on + strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.816 kb on - strand, within MPMX19_06264 at 14.816 kb on - strand, within MPMX19_06264 at 14.906 kb on + strand, within MPMX19_06264 at 14.906 kb on + strand, within MPMX19_06264 at 14.907 kb on - strand, within MPMX19_06264 at 15.262 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.310 kb on - strand at 15.373 kb on + strand at 15.373 kb on + strand at 15.374 kb on - strand at 15.374 kb on - strand at 15.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 13,259 + MPMX19_06260 0.80 +0.7 13,259 + MPMX19_06260 0.80 -0.5 13,259 + MPMX19_06260 0.80 -0.7 13,260 - MPMX19_06260 0.80 -1.6 13,260 - MPMX19_06260 0.80 +0.2 13,365 - -0.8 13,365 - +0.1 13,365 - -2.7 13,365 - +0.4 13,405 + -0.2 13,405 + -0.2 13,405 + -0.2 13,406 - -0.6 13,406 - +1.4 13,406 - -0.6 13,406 - +0.6 13,406 - -1.6 13,410 + -0.3 13,411 - -0.6 13,411 - +0.8 13,411 - -0.4 13,415 + +1.4 13,416 - -2.3 13,450 + -1.0 13,450 + -2.3 13,450 + -1.2 13,450 + -0.4 13,450 + +0.4 13,450 + -2.6 13,450 + -0.2 13,450 + -1.8 13,451 - -0.9 13,451 - +0.4 13,451 - -0.4 13,451 - -0.6 13,451 - -0.3 13,451 - +1.4 13,451 - -2.2 13,451 - -0.9 13,451 - -1.0 13,451 - -0.2 13,617 + MPMX19_06261 0.14 -1.4 13,617 + MPMX19_06261 0.14 -1.0 13,618 - MPMX19_06261 0.14 -1.2 13,755 + MPMX19_06261 0.46 -1.2 13,755 + MPMX19_06261 0.46 -0.2 13,755 + MPMX19_06261 0.46 +2.4 13,755 + MPMX19_06261 0.46 -1.2 13,755 + MPMX19_06261 0.46 -3.2 13,756 - MPMX19_06261 0.47 -1.3 13,756 - MPMX19_06261 0.47 -0.2 13,756 - MPMX19_06261 0.47 -0.9 13,923 + MPMX19_06261 0.86 +0.2 13,923 + MPMX19_06261 0.86 -1.5 13,923 + MPMX19_06261 0.86 +0.4 13,924 - MPMX19_06261 0.86 -1.3 13,924 - MPMX19_06261 0.86 -0.9 13,924 - MPMX19_06261 0.86 -0.6 13,924 - MPMX19_06261 0.86 -1.6 13,924 - MPMX19_06261 0.86 -0.9 13,924 - MPMX19_06261 0.86 +0.9 13,924 - MPMX19_06261 0.86 -1.0 14,007 - -0.3 14,215 + MPMX19_06263 0.25 -0.9 14,215 + MPMX19_06263 0.25 -2.0 14,215 + MPMX19_06263 0.25 -1.3 14,216 - MPMX19_06263 0.25 -1.2 14,216 - MPMX19_06263 0.25 -1.4 14,281 + MPMX19_06263 0.47 -1.4 14,281 + MPMX19_06263 0.47 -0.3 14,459 + +1.2 14,459 + -0.4 14,459 + -1.2 14,459 + -1.1 14,460 - -2.3 14,460 - -2.0 14,460 - -0.0 14,479 + -1.3 14,479 + +0.8 14,480 - +0.4 14,648 + MPMX19_06264 0.22 -0.2 14,648 + MPMX19_06264 0.22 -0.9 14,649 - MPMX19_06264 0.22 -1.2 14,761 + MPMX19_06264 0.37 -0.0 14,761 + MPMX19_06264 0.37 -1.2 14,762 - MPMX19_06264 0.37 -0.7 14,762 - MPMX19_06264 0.37 -1.0 14,762 - MPMX19_06264 0.37 -3.1 14,816 - MPMX19_06264 0.45 +0.2 14,816 - MPMX19_06264 0.45 -0.6 14,906 + MPMX19_06264 0.57 -0.2 14,906 + MPMX19_06264 0.57 -0.2 14,907 - MPMX19_06264 0.57 -0.0 15,262 + -1.8 15,307 + +0.4 15,307 + -0.2 15,307 + -0.9 15,307 + -0.7 15,307 + -0.9 15,307 + -0.9 15,308 - -1.6 15,308 - -0.3 15,308 - -0.9 15,308 - +0.8 15,308 - +0.2 15,308 - -1.0 15,308 - -0.6 15,309 + -0.5 15,309 + -0.9 15,309 + -1.5 15,309 + -0.8 15,309 + -0.4 15,309 + +0.7 15,309 + -1.6 15,310 - +1.1 15,373 + -1.7 15,373 + -0.6 15,374 - +3.4 15,374 - -1.4 15,374 - -0.6
Or see this region's nucleotide sequence