Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06241

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06240 and MPMX19_06241 are separated by 113 nucleotidesMPMX19_06241 and MPMX19_06242 are separated by 166 nucleotides MPMX19_06240: MPMX19_06240 - Sensor histidine kinase BtsS, at 428,811 to 430,508 _06240 MPMX19_06241: MPMX19_06241 - hypothetical protein, at 430,622 to 431,422 _06241 MPMX19_06242: MPMX19_06242 - Fe(3+)-pyochelin receptor, at 431,589 to 433,814 _06242 Position (kb) 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 430.204 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.363 kb on + strandat 430.364 kb on - strandat 430.364 kb on - strandat 430.364 kb on - strandat 430.364 kb on - strandat 430.438 kb on + strandat 430.439 kb on - strandat 430.453 kb on + strandat 430.453 kb on + strandat 430.453 kb on + strandat 430.532 kb on + strandat 430.533 kb on - strandat 430.561 kb on + strandat 430.561 kb on + strandat 430.561 kb on + strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.605 kb on + strandat 430.605 kb on + strandat 430.606 kb on - strandat 430.619 kb on + strandat 430.942 kb on - strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.331 kb on + strand, within MPMX19_06241at 431.331 kb on + strand, within MPMX19_06241at 431.331 kb on + strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.552 kb on + strandat 431.553 kb on - strandat 431.590 kb on + strandat 431.591 kb on - strandat 431.635 kb on + strandat 431.635 kb on + strandat 431.635 kb on + strandat 431.635 kb on + strandat 431.635 kb on + strandat 431.635 kb on + strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.636 kb on - strandat 431.671 kb on + strandat 431.671 kb on + strandat 431.671 kb on + strandat 431.672 kb on - strandat 431.672 kb on - strandat 431.672 kb on - strandat 431.672 kb on - strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.674 kb on + strandat 431.675 kb on - strandat 431.675 kb on - strandat 431.675 kb on - strandat 431.675 kb on - strandat 431.675 kb on - strandat 431.675 kb on - strandat 431.734 kb on + strandat 431.734 kb on + strandat 431.734 kb on + strandat 431.735 kb on - strandat 431.735 kb on - strandat 431.735 kb on - strandat 431.735 kb on - strandat 431.735 kb on - strandat 431.761 kb on + strandat 431.809 kb on + strandat 431.809 kb on + strandat 431.809 kb on + strandat 431.809 kb on + strandat 431.809 kb on + strandat 431.810 kb on - strandat 431.810 kb on - strandat 431.810 kb on - strandat 431.810 kb on - strandat 431.878 kb on + strand, within MPMX19_06242at 431.878 kb on + strand, within MPMX19_06242at 431.878 kb on + strand, within MPMX19_06242at 431.879 kb on - strand, within MPMX19_06242at 431.879 kb on - strand, within MPMX19_06242at 431.879 kb on - strand, within MPMX19_06242at 431.879 kb on - strand, within MPMX19_06242at 431.977 kb on + strand, within MPMX19_06242at 431.986 kb on + strand, within MPMX19_06242at 431.986 kb on + strand, within MPMX19_06242at 431.986 kb on + strand, within MPMX19_06242at 431.986 kb on + strand, within MPMX19_06242at 431.987 kb on - strand, within MPMX19_06242at 431.987 kb on - strand, within MPMX19_06242at 431.987 kb on - strand, within MPMX19_06242at 431.987 kb on - strand, within MPMX19_06242at 431.987 kb on - strand, within MPMX19_06242at 431.987 kb on - strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.064 kb on + strand, within MPMX19_06242at 432.065 kb on - strand, within MPMX19_06242at 432.065 kb on - strand, within MPMX19_06242at 432.065 kb on - strand, within MPMX19_06242at 432.065 kb on - strand, within MPMX19_06242at 432.065 kb on - strand, within MPMX19_06242at 432.160 kb on + strand, within MPMX19_06242at 432.161 kb on - strand, within MPMX19_06242at 432.161 kb on - strand, within MPMX19_06242at 432.161 kb on - strand, within MPMX19_06242at 432.161 kb on - strand, within MPMX19_06242at 432.161 kb on - strand, within MPMX19_06242at 432.184 kb on + strand, within MPMX19_06242at 432.184 kb on + strand, within MPMX19_06242at 432.184 kb on + strand, within MPMX19_06242at 432.184 kb on + strand, within MPMX19_06242at 432.184 kb on + strand, within MPMX19_06242at 432.184 kb on + strand, within MPMX19_06242at 432.185 kb on - strand, within MPMX19_06242at 432.185 kb on - strand, within MPMX19_06242at 432.247 kb on + strand, within MPMX19_06242at 432.247 kb on + strand, within MPMX19_06242at 432.247 kb on + strand, within MPMX19_06242at 432.247 kb on + strand, within MPMX19_06242at 432.247 kb on + strand, within MPMX19_06242at 432.247 kb on + strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.248 kb on - strand, within MPMX19_06242at 432.268 kb on + strand, within MPMX19_06242at 432.268 kb on + strand, within MPMX19_06242at 432.268 kb on + strand, within MPMX19_06242at 432.268 kb on + strand, within MPMX19_06242at 432.269 kb on - strand, within MPMX19_06242at 432.269 kb on - strand, within MPMX19_06242at 432.269 kb on - strand, within MPMX19_06242at 432.269 kb on - strand, within MPMX19_06242at 432.277 kb on + strand, within MPMX19_06242at 432.277 kb on + strand, within MPMX19_06242at 432.277 kb on + strand, within MPMX19_06242at 432.277 kb on + strand, within MPMX19_06242at 432.278 kb on - strand, within MPMX19_06242at 432.295 kb on + strand, within MPMX19_06242at 432.295 kb on + strand, within MPMX19_06242at 432.295 kb on + strand, within MPMX19_06242at 432.295 kb on + strand, within MPMX19_06242at 432.295 kb on + strand, within MPMX19_06242at 432.296 kb on - strand, within MPMX19_06242at 432.296 kb on - strand, within MPMX19_06242at 432.296 kb on - strand, within MPMX19_06242at 432.310 kb on + strand, within MPMX19_06242at 432.311 kb on - strand, within MPMX19_06242at 432.311 kb on - strand, within MPMX19_06242

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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429,637 + MPMX19_06240 0.49 +0.5
429,637 + MPMX19_06240 0.49 +0.1
429,637 + MPMX19_06240 0.49 -1.2
429,637 + MPMX19_06240 0.49 +0.7
429,637 + MPMX19_06240 0.49 -0.9
429,637 + MPMX19_06240 0.49 -0.5
429,637 + MPMX19_06240 0.49 -0.4
429,637 + MPMX19_06240 0.49 +0.5
429,637 + MPMX19_06240 0.49 -0.9
429,638 - MPMX19_06240 0.49 +1.5
429,638 - MPMX19_06240 0.49 -1.0
429,638 - MPMX19_06240 0.49 -1.0
429,638 - MPMX19_06240 0.49 -1.7
429,638 - MPMX19_06240 0.49 +0.0
429,638 - MPMX19_06240 0.49 -0.8
429,638 - MPMX19_06240 0.49 -2.5
429,638 - MPMX19_06240 0.49 +1.5
429,638 - MPMX19_06240 0.49 -1.0
429,638 - MPMX19_06240 0.49 -0.8
429,638 - MPMX19_06240 0.49 -1.0
429,638 - MPMX19_06240 0.49 -0.3
429,638 - MPMX19_06240 0.49 +0.6
429,638 - MPMX19_06240 0.49 -0.1
430,204 + MPMX19_06240 0.82 -1.5
430,327 + MPMX19_06240 0.89 -1.7
430,327 + MPMX19_06240 0.89 -0.1
430,327 + MPMX19_06240 0.89 -0.1
430,327 + MPMX19_06240 0.89 +0.2
430,327 + MPMX19_06240 0.89 -0.1
430,327 + MPMX19_06240 0.89 +0.2
430,327 + MPMX19_06240 0.89 +0.5
430,327 + MPMX19_06240 0.89 -0.8
430,327 + MPMX19_06240 0.89 -1.5
430,328 - MPMX19_06240 0.89 +1.5
430,328 - MPMX19_06240 0.89 -1.1
430,328 - MPMX19_06240 0.89 -1.5
430,328 - MPMX19_06240 0.89 +0.1
430,328 - MPMX19_06240 0.89 -0.5
430,328 - MPMX19_06240 0.89 +1.5
430,328 - MPMX19_06240 0.89 -0.9
430,328 - MPMX19_06240 0.89 -0.1
430,328 - MPMX19_06240 0.89 -1.7
430,363 + -1.5
430,364 - -0.1
430,364 - -2.2
430,364 - +2.5
430,364 - +2.2
430,438 + -0.1
430,439 - -2.5
430,453 + +0.5
430,453 + +0.5
430,453 + -0.7
430,532 + -0.0
430,533 - +0.4
430,561 + +0.9
430,561 + -0.1
430,561 + +0.9
430,562 - -1.1
430,562 - +0.0
430,562 - -0.9
430,562 - -0.3
430,562 - -0.1
430,562 - -2.1
430,562 - -0.3
430,605 + -0.4
430,605 + -0.9
430,606 - +0.5
430,619 + -0.9
430,942 - MPMX19_06241 0.40 -0.4
431,136 + MPMX19_06241 0.64 -0.9
431,136 + MPMX19_06241 0.64 -0.7
431,136 + MPMX19_06241 0.64 -1.9
431,136 + MPMX19_06241 0.64 +1.5
431,136 + MPMX19_06241 0.64 -1.4
431,137 - MPMX19_06241 0.64 -1.8
431,137 - MPMX19_06241 0.64 -0.9
431,137 - MPMX19_06241 0.64 -1.7
431,137 - MPMX19_06241 0.64 -0.9
431,331 + MPMX19_06241 0.89 -1.3
431,331 + MPMX19_06241 0.89 -0.5
431,331 + MPMX19_06241 0.89 -0.9
431,332 - MPMX19_06241 0.89 +0.6
431,332 - MPMX19_06241 0.89 -1.1
431,332 - MPMX19_06241 0.89 -1.1
431,332 - MPMX19_06241 0.89 -1.1
431,552 + +0.1
431,553 - +2.2
431,590 + -0.1
431,591 - -0.1
431,635 + +1.3
431,635 + -3.1
431,635 + -1.0
431,635 + -0.5
431,635 + -1.0
431,635 + -0.6
431,636 - -1.0
431,636 - +0.7
431,636 - -1.4
431,636 - +2.0
431,636 - -0.1
431,636 - -1.1
431,636 - -0.9
431,636 - +0.1
431,636 - -0.5
431,636 - -0.9
431,636 - -0.1
431,636 - -1.1
431,636 - +0.5
431,636 - -0.5
431,636 - +0.8
431,671 + -1.4
431,671 + -0.2
431,671 + -1.8
431,672 - -0.5
431,672 - -0.5
431,672 - +0.9
431,672 - -1.3
431,674 + +1.9
431,674 + -1.5
431,674 + -0.6
431,674 + -0.1
431,674 + -2.1
431,674 + -0.4
431,674 + -0.8
431,674 + +3.5
431,674 + -0.5
431,674 + -0.9
431,674 + -0.1
431,675 - +0.5
431,675 - -1.5
431,675 - -2.6
431,675 - -0.5
431,675 - +1.5
431,675 - +0.5
431,734 + +0.5
431,734 + +1.0
431,734 + -0.1
431,735 - -0.1
431,735 - -1.1
431,735 - -1.5
431,735 - -1.1
431,735 - +1.5
431,761 + +0.5
431,809 + -0.5
431,809 + -0.4
431,809 + +0.2
431,809 + -1.2
431,809 + -1.7
431,810 - +0.6
431,810 - -0.5
431,810 - -0.1
431,810 - -0.2
431,878 + MPMX19_06242 0.13 +2.5
431,878 + MPMX19_06242 0.13 -0.1
431,878 + MPMX19_06242 0.13 +0.3
431,879 - MPMX19_06242 0.13 -0.6
431,879 - MPMX19_06242 0.13 +0.5
431,879 - MPMX19_06242 0.13 -1.1
431,879 - MPMX19_06242 0.13 -0.5
431,977 + MPMX19_06242 0.17 -0.1
431,986 + MPMX19_06242 0.18 -2.7
431,986 + MPMX19_06242 0.18 -0.5
431,986 + MPMX19_06242 0.18 -0.1
431,986 + MPMX19_06242 0.18 -1.7
431,987 - MPMX19_06242 0.18 -1.1
431,987 - MPMX19_06242 0.18 -0.5
431,987 - MPMX19_06242 0.18 +0.5
431,987 - MPMX19_06242 0.18 -2.1
431,987 - MPMX19_06242 0.18 +0.7
431,987 - MPMX19_06242 0.18 +0.1
432,064 + MPMX19_06242 0.21 -0.1
432,064 + MPMX19_06242 0.21 +0.7
432,064 + MPMX19_06242 0.21 -0.5
432,064 + MPMX19_06242 0.21 -1.1
432,064 + MPMX19_06242 0.21 -0.9
432,064 + MPMX19_06242 0.21 +1.5
432,064 + MPMX19_06242 0.21 -1.4
432,065 - MPMX19_06242 0.21 -0.4
432,065 - MPMX19_06242 0.21 -1.7
432,065 - MPMX19_06242 0.21 +0.9
432,065 - MPMX19_06242 0.21 -0.5
432,065 - MPMX19_06242 0.21 -0.5
432,160 + MPMX19_06242 0.26 +0.1
432,161 - MPMX19_06242 0.26 +0.3
432,161 - MPMX19_06242 0.26 +1.0
432,161 - MPMX19_06242 0.26 +0.4
432,161 - MPMX19_06242 0.26 -1.4
432,161 - MPMX19_06242 0.26 +0.5
432,184 + MPMX19_06242 0.27 -1.1
432,184 + MPMX19_06242 0.27 +0.6
432,184 + MPMX19_06242 0.27 -1.4
432,184 + MPMX19_06242 0.27 -0.5
432,184 + MPMX19_06242 0.27 +0.1
432,184 + MPMX19_06242 0.27 +1.5
432,185 - MPMX19_06242 0.27 +0.6
432,185 - MPMX19_06242 0.27 -1.1
432,247 + MPMX19_06242 0.30 -0.1
432,247 + MPMX19_06242 0.30 -0.9
432,247 + MPMX19_06242 0.30 +0.7
432,247 + MPMX19_06242 0.30 -1.5
432,247 + MPMX19_06242 0.30 -0.5
432,247 + MPMX19_06242 0.30 -1.9
432,248 - MPMX19_06242 0.30 +1.5
432,248 - MPMX19_06242 0.30 -1.4
432,248 - MPMX19_06242 0.30 -0.5
432,248 - MPMX19_06242 0.30 -1.5
432,248 - MPMX19_06242 0.30 -1.9
432,248 - MPMX19_06242 0.30 -0.8
432,248 - MPMX19_06242 0.30 -0.7
432,268 + MPMX19_06242 0.31 -1.4
432,268 + MPMX19_06242 0.31 -0.5
432,268 + MPMX19_06242 0.31 +0.9
432,268 + MPMX19_06242 0.31 -0.5
432,269 - MPMX19_06242 0.31 -0.5
432,269 - MPMX19_06242 0.31 +0.9
432,269 - MPMX19_06242 0.31 -0.9
432,269 - MPMX19_06242 0.31 +0.2
432,277 + MPMX19_06242 0.31 -0.9
432,277 + MPMX19_06242 0.31 -0.1
432,277 + MPMX19_06242 0.31 -0.9
432,277 + MPMX19_06242 0.31 -0.9
432,278 - MPMX19_06242 0.31 +0.7
432,295 + MPMX19_06242 0.32 -2.2
432,295 + MPMX19_06242 0.32 +0.9
432,295 + MPMX19_06242 0.32 +0.8
432,295 + MPMX19_06242 0.32 +1.5
432,295 + MPMX19_06242 0.32 -0.1
432,296 - MPMX19_06242 0.32 +0.0
432,296 - MPMX19_06242 0.32 -1.1
432,296 - MPMX19_06242 0.32 -0.9
432,310 + MPMX19_06242 0.32 -0.7
432,311 - MPMX19_06242 0.32 -1.9
432,311 - MPMX19_06242 0.32 -0.9

Or see this region's nucleotide sequence