Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06167

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06166 and MPMX19_06167 overlap by 4 nucleotidesMPMX19_06167 and MPMX19_06168 are separated by 609 nucleotides MPMX19_06166: MPMX19_06166 - putative acyl-CoA dehydrogenase fadE25, at 353,404 to 354,621 _06166 MPMX19_06167: MPMX19_06167 - hypothetical protein, at 354,618 to 354,968 _06167 MPMX19_06168: MPMX19_06168 - hypothetical protein, at 355,578 to 358,229 _06168 Position (kb) 354 355Strain fitness (log2 ratio) -2 -1 0 1at 353.684 kb on + strand, within MPMX19_06166at 353.684 kb on + strand, within MPMX19_06166at 353.685 kb on - strand, within MPMX19_06166at 353.685 kb on - strand, within MPMX19_06166at 353.685 kb on - strand, within MPMX19_06166at 353.685 kb on - strand, within MPMX19_06166at 353.804 kb on + strand, within MPMX19_06166at 353.804 kb on + strand, within MPMX19_06166at 353.804 kb on + strand, within MPMX19_06166at 353.804 kb on + strand, within MPMX19_06166at 353.804 kb on + strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.805 kb on - strand, within MPMX19_06166at 353.906 kb on + strand, within MPMX19_06166at 353.907 kb on - strand, within MPMX19_06166at 353.907 kb on - strand, within MPMX19_06166at 354.017 kb on + strand, within MPMX19_06166at 354.017 kb on + strand, within MPMX19_06166at 354.018 kb on - strand, within MPMX19_06166at 354.113 kb on + strand, within MPMX19_06166at 354.113 kb on + strand, within MPMX19_06166at 354.114 kb on - strand, within MPMX19_06166at 354.114 kb on - strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.326 kb on + strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.327 kb on - strand, within MPMX19_06166at 354.552 kb on + strandat 354.552 kb on + strandat 354.553 kb on - strandat 354.781 kb on + strand, within MPMX19_06167at 354.782 kb on - strand, within MPMX19_06167at 354.782 kb on - strand, within MPMX19_06167at 354.782 kb on - strand, within MPMX19_06167at 354.943 kb on + strandat 354.944 kb on - strandat 355.006 kb on + strandat 355.006 kb on + strandat 355.007 kb on - strandat 355.007 kb on - strandat 355.007 kb on - strandat 355.007 kb on - strandat 355.089 kb on - strandat 355.100 kb on + strandat 355.100 kb on + strandat 355.101 kb on - strandat 355.142 kb on - strandat 355.142 kb on - strandat 355.162 kb on + strandat 355.162 kb on + strandat 355.162 kb on + strandat 355.162 kb on + strandat 355.162 kb on + strandat 355.163 kb on - strandat 355.163 kb on - strandat 355.163 kb on - strandat 355.163 kb on - strandat 355.163 kb on - strandat 355.163 kb on - strandat 355.326 kb on - strandat 355.326 kb on - strandat 355.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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353,684 + MPMX19_06166 0.23 -0.1
353,684 + MPMX19_06166 0.23 +1.5
353,685 - MPMX19_06166 0.23 +1.1
353,685 - MPMX19_06166 0.23 -2.1
353,685 - MPMX19_06166 0.23 -2.5
353,685 - MPMX19_06166 0.23 -0.9
353,804 + MPMX19_06166 0.33 -0.1
353,804 + MPMX19_06166 0.33 -0.1
353,804 + MPMX19_06166 0.33 +0.9
353,804 + MPMX19_06166 0.33 +0.5
353,804 + MPMX19_06166 0.33 +0.1
353,805 - MPMX19_06166 0.33 +0.5
353,805 - MPMX19_06166 0.33 -0.5
353,805 - MPMX19_06166 0.33 -0.5
353,805 - MPMX19_06166 0.33 -0.4
353,805 - MPMX19_06166 0.33 +0.5
353,805 - MPMX19_06166 0.33 -2.0
353,805 - MPMX19_06166 0.33 -0.3
353,805 - MPMX19_06166 0.33 -0.1
353,805 - MPMX19_06166 0.33 +0.5
353,805 - MPMX19_06166 0.33 -1.0
353,906 + MPMX19_06166 0.41 -0.9
353,907 - MPMX19_06166 0.41 +1.5
353,907 - MPMX19_06166 0.41 +0.5
354,017 + MPMX19_06166 0.50 -0.9
354,017 + MPMX19_06166 0.50 -0.5
354,018 - MPMX19_06166 0.50 +1.5
354,113 + MPMX19_06166 0.58 +0.3
354,113 + MPMX19_06166 0.58 -0.1
354,114 - MPMX19_06166 0.58 -1.8
354,114 - MPMX19_06166 0.58 -0.9
354,326 + MPMX19_06166 0.76 -0.1
354,326 + MPMX19_06166 0.76 -1.4
354,326 + MPMX19_06166 0.76 -1.9
354,326 + MPMX19_06166 0.76 -1.1
354,326 + MPMX19_06166 0.76 -1.1
354,326 + MPMX19_06166 0.76 +0.3
354,326 + MPMX19_06166 0.76 -0.1
354,326 + MPMX19_06166 0.76 -1.5
354,326 + MPMX19_06166 0.76 -0.1
354,326 + MPMX19_06166 0.76 -2.2
354,326 + MPMX19_06166 0.76 -0.1
354,326 + MPMX19_06166 0.76 +0.9
354,326 + MPMX19_06166 0.76 -1.9
354,326 + MPMX19_06166 0.76 +0.7
354,326 + MPMX19_06166 0.76 -0.5
354,326 + MPMX19_06166 0.76 -0.4
354,326 + MPMX19_06166 0.76 +0.7
354,326 + MPMX19_06166 0.76 +0.5
354,326 + MPMX19_06166 0.76 +0.9
354,326 + MPMX19_06166 0.76 -0.4
354,326 + MPMX19_06166 0.76 -1.8
354,326 + MPMX19_06166 0.76 +0.1
354,326 + MPMX19_06166 0.76 -1.5
354,327 - MPMX19_06166 0.76 +0.5
354,327 - MPMX19_06166 0.76 -1.9
354,327 - MPMX19_06166 0.76 -1.5
354,327 - MPMX19_06166 0.76 -0.9
354,327 - MPMX19_06166 0.76 -0.4
354,327 - MPMX19_06166 0.76 -1.5
354,327 - MPMX19_06166 0.76 -0.9
354,327 - MPMX19_06166 0.76 -0.5
354,327 - MPMX19_06166 0.76 -1.9
354,327 - MPMX19_06166 0.76 -1.1
354,327 - MPMX19_06166 0.76 -0.4
354,327 - MPMX19_06166 0.76 -0.9
354,327 - MPMX19_06166 0.76 -0.1
354,327 - MPMX19_06166 0.76 -0.1
354,327 - MPMX19_06166 0.76 -1.4
354,327 - MPMX19_06166 0.76 -0.7
354,552 + +1.7
354,552 + +0.5
354,553 - -0.7
354,781 + MPMX19_06167 0.46 -0.5
354,782 - MPMX19_06167 0.47 -0.1
354,782 - MPMX19_06167 0.47 -1.1
354,782 - MPMX19_06167 0.47 +1.0
354,943 + -1.0
354,944 - +1.5
355,006 + +0.7
355,006 + -1.6
355,007 - -0.1
355,007 - -0.5
355,007 - -1.1
355,007 - +1.3
355,089 - -0.5
355,100 + +1.5
355,100 + +0.5
355,101 - -0.7
355,142 - -0.1
355,142 - -0.4
355,162 + -2.1
355,162 + +0.6
355,162 + +1.5
355,162 + -1.7
355,162 + +0.1
355,163 - -0.4
355,163 - -0.1
355,163 - +0.1
355,163 - -0.5
355,163 - -0.4
355,163 - -0.5
355,326 - -0.0
355,326 - +0.5
355,629 - -0.9

Or see this region's nucleotide sequence