Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05933 and MPMX19_05934 are separated by 41 nucleotides MPMX19_05934 and MPMX19_05935 are separated by 222 nucleotides
MPMX19_05933: MPMX19_05933 - hypothetical protein, at 75,471 to 76,337
_05933
MPMX19_05934: MPMX19_05934 - Arylesterase, at 76,379 to 77,206
_05934
MPMX19_05935: MPMX19_05935 - sugar efflux transporter, at 77,429 to 78,574
_05935
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.398 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.402 kb on + strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.403 kb on - strand at 75.430 kb on + strand at 75.431 kb on - strand at 75.473 kb on - strand at 75.725 kb on - strand, within MPMX19_05933 at 76.064 kb on - strand, within MPMX19_05933 at 76.076 kb on - strand, within MPMX19_05933 at 76.311 kb on - strand at 76.369 kb on - strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.875 kb on + strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.166 kb on + strand at 77.166 kb on + strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.357 kb on + strand at 77.378 kb on + strand at 77.379 kb on - strand at 77.388 kb on - strand at 77.564 kb on + strand, within MPMX19_05935 at 77.564 kb on + strand, within MPMX19_05935 at 77.564 kb on + strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.576 kb on + strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.790 kb on - strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 75,398 + +0.1 75,398 + -1.3 75,398 + +0.5 75,398 + -0.1 75,398 + -1.2 75,398 + -2.3 75,398 + -1.5 75,398 + -1.8 75,398 + -0.3 75,398 + -0.1 75,398 + -0.9 75,398 + +0.2 75,398 + -2.1 75,398 + -0.9 75,398 + -1.9 75,398 + +0.1 75,398 + -1.2 75,398 + -0.1 75,398 + -0.3 75,398 + -0.5 75,398 + +0.6 75,398 + -1.6 75,402 + -0.5 75,402 + -0.7 75,402 + -0.3 75,402 + -0.1 75,402 + -0.5 75,402 + +0.9 75,402 + -0.1 75,402 + +1.1 75,402 + -0.5 75,402 + -2.3 75,402 + -0.5 75,402 + +0.6 75,402 + +0.5 75,402 + +0.3 75,402 + +0.1 75,402 + -2.4 75,402 + -0.1 75,402 + -0.1 75,402 + -1.1 75,402 + +1.2 75,402 + -0.9 75,402 + +0.9 75,403 - -0.9 75,403 - +0.0 75,403 - +0.7 75,403 - +0.7 75,403 - +0.5 75,403 - -0.9 75,403 - -1.9 75,430 + -1.1 75,431 - +1.5 75,473 - -1.2 75,725 - MPMX19_05933 0.29 -1.9 76,064 - MPMX19_05933 0.68 +1.1 76,076 - MPMX19_05933 0.70 -0.5 76,311 - +0.5 76,369 - -2.2 76,458 + -1.5 76,458 + -1.1 76,458 + -3.2 76,458 + +2.5 76,458 + +0.3 76,458 + +0.7 76,458 + +0.1 76,458 + +0.1 76,458 + +1.5 76,458 + -1.3 76,459 - -0.4 76,459 - +0.9 76,459 - -1.4 76,459 - -0.1 76,459 - -0.9 76,459 - -1.1 76,459 - +0.1 76,459 - -0.1 76,875 + MPMX19_05934 0.60 -1.1 76,876 - MPMX19_05934 0.60 +0.2 76,876 - MPMX19_05934 0.60 -3.0 76,876 - MPMX19_05934 0.60 -1.1 76,876 - MPMX19_05934 0.60 +1.5 76,876 - MPMX19_05934 0.60 -0.9 76,876 - MPMX19_05934 0.60 -0.9 76,876 - MPMX19_05934 0.60 -2.6 77,074 - MPMX19_05934 0.84 -1.5 77,074 - MPMX19_05934 0.84 -0.3 77,074 - MPMX19_05934 0.84 -1.1 77,074 - MPMX19_05934 0.84 -0.9 77,166 + +0.1 77,166 + -0.5 77,167 - -0.8 77,167 - -0.5 77,167 - -1.1 77,167 - -1.9 77,167 - +0.1 77,167 - +0.9 77,285 + -0.9 77,285 + -0.3 77,285 + -2.0 77,285 + -1.7 77,286 - +1.5 77,286 - +0.5 77,286 - -1.1 77,357 + -0.5 77,378 + +0.7 77,379 - -0.3 77,388 - -2.6 77,564 + MPMX19_05935 0.12 +0.7 77,564 + MPMX19_05935 0.12 -0.1 77,564 + MPMX19_05935 0.12 -0.3 77,565 - MPMX19_05935 0.12 -1.5 77,565 - MPMX19_05935 0.12 +0.9 77,565 - MPMX19_05935 0.12 -0.1 77,565 - MPMX19_05935 0.12 +2.1 77,576 + MPMX19_05935 0.13 +0.9 77,577 - MPMX19_05935 0.13 +0.0 77,577 - MPMX19_05935 0.13 +0.1 77,577 - MPMX19_05935 0.13 -1.0 77,577 - MPMX19_05935 0.13 +0.1 77,696 + MPMX19_05935 0.23 +0.1 77,696 + MPMX19_05935 0.23 +0.8 77,697 - MPMX19_05935 0.23 +0.1 77,697 - MPMX19_05935 0.23 -0.5 77,789 + MPMX19_05935 0.31 -0.5 77,789 + MPMX19_05935 0.31 -0.1 77,790 - MPMX19_05935 0.32 -1.3 78,014 + MPMX19_05935 0.51 -1.1 78,014 + MPMX19_05935 0.51 -0.3 78,014 + MPMX19_05935 0.51 -1.1 78,014 + MPMX19_05935 0.51 -1.5 78,014 + MPMX19_05935 0.51 -0.9 78,015 - MPMX19_05935 0.51 +0.5 78,015 - MPMX19_05935 0.51 -1.5 78,191 + MPMX19_05935 0.66 -0.3 78,191 + MPMX19_05935 0.66 +0.1 78,191 + MPMX19_05935 0.66 +0.5 78,191 + MPMX19_05935 0.66 -0.9 78,191 + MPMX19_05935 0.66 -0.5 78,191 + MPMX19_05935 0.66 -0.5 78,191 + MPMX19_05935 0.66 -1.0 78,191 + MPMX19_05935 0.66 -0.3 78,192 - MPMX19_05935 0.67 -0.1 78,192 - MPMX19_05935 0.67 +0.9
Or see this region's nucleotide sequence