Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05825 and MPMX19_05826 are separated by 269 nucleotides MPMX19_05826 and MPMX19_05827 are separated by 6 nucleotides MPMX19_05827 and MPMX19_05828 are separated by 235 nucleotides
MPMX19_05825: MPMX19_05825 - hypothetical protein, at 553,417 to 554,061
_05825
MPMX19_05826: MPMX19_05826 - hypothetical protein, at 554,331 to 554,840
_05826
MPMX19_05827: MPMX19_05827 - hypothetical protein, at 554,847 to 556,628
_05827
MPMX19_05828: MPMX19_05828 - Ferredoxin--NADP reductase, at 556,864 to 557,637
_05828
Position (kb) 554
555
556
557 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 554.078 kb on + strand at 554.079 kb on - strand at 554.079 kb on - strand at 554.104 kb on + strand at 554.104 kb on + strand at 554.104 kb on + strand at 554.104 kb on + strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.105 kb on - strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.144 kb on + strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.145 kb on - strand at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.553 kb on + strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.554 kb on - strand, within MPMX19_05826 at 554.998 kb on + strand at 554.998 kb on + strand at 554.998 kb on + strand at 554.999 kb on - strand at 554.999 kb on - strand at 554.999 kb on - strand at 554.999 kb on - strand at 555.259 kb on + strand, within MPMX19_05827 at 555.259 kb on + strand, within MPMX19_05827 at 555.259 kb on + strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.260 kb on - strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.292 kb on + strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.293 kb on - strand, within MPMX19_05827 at 555.520 kb on + strand, within MPMX19_05827 at 555.520 kb on + strand, within MPMX19_05827 at 555.521 kb on - strand, within MPMX19_05827 at 555.521 kb on - strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.559 kb on + strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.560 kb on - strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.751 kb on + strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.752 kb on - strand, within MPMX19_05827 at 555.826 kb on + strand, within MPMX19_05827 at 555.826 kb on + strand, within MPMX19_05827 at 555.826 kb on + strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.827 kb on - strand, within MPMX19_05827 at 555.988 kb on + strand, within MPMX19_05827 at 555.988 kb on + strand, within MPMX19_05827 at 555.988 kb on + strand, within MPMX19_05827 at 555.989 kb on - strand, within MPMX19_05827 at 556.002 kb on - strand, within MPMX19_05827 at 556.045 kb on + strand, within MPMX19_05827 at 556.045 kb on + strand, within MPMX19_05827 at 556.046 kb on - strand, within MPMX19_05827 at 556.046 kb on - strand, within MPMX19_05827 at 556.069 kb on + strand, within MPMX19_05827 at 556.069 kb on + strand, within MPMX19_05827 at 556.070 kb on - strand, within MPMX19_05827 at 556.070 kb on - strand, within MPMX19_05827 at 556.096 kb on + strand, within MPMX19_05827 at 556.097 kb on - strand, within MPMX19_05827 at 556.097 kb on - strand, within MPMX19_05827 at 556.097 kb on - strand, within MPMX19_05827 at 556.126 kb on + strand, within MPMX19_05827 at 556.126 kb on + strand, within MPMX19_05827 at 556.126 kb on + strand, within MPMX19_05827 at 556.127 kb on - strand, within MPMX19_05827 at 556.127 kb on - strand, within MPMX19_05827 at 556.169 kb on - strand, within MPMX19_05827 at 556.169 kb on - strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.390 kb on + strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.391 kb on - strand, within MPMX19_05827 at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.641 kb on + strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.642 kb on - strand at 556.702 kb on + strand at 556.702 kb on + strand at 556.702 kb on + strand at 556.703 kb on - strand at 556.703 kb on - strand at 556.796 kb on + strand at 556.796 kb on + strand at 556.796 kb on + strand at 556.797 kb on - strand at 556.797 kb on - strand at 556.819 kb on - strand at 556.819 kb on - strand at 556.819 kb on - strand at 556.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 554,078 + -0.8 554,079 - -2.5 554,079 - -0.3 554,104 + -0.3 554,104 + +0.3 554,104 + -0.7 554,104 + +0.7 554,105 - -0.1 554,105 - +0.3 554,105 - -0.7 554,105 - -1.0 554,105 - -1.7 554,105 - +1.3 554,144 + -0.5 554,144 + +1.0 554,144 + -0.4 554,144 + +0.3 554,144 + +0.3 554,144 + -0.7 554,144 + -0.3 554,144 + -2.0 554,144 + -1.5 554,144 + +0.7 554,144 + -0.6 554,144 + -2.2 554,144 + -0.5 554,144 + -0.5 554,144 + -0.7 554,144 + -2.4 554,145 - -1.0 554,145 - +0.1 554,145 - -1.5 554,145 - -1.5 554,145 - -1.2 554,145 - -0.2 554,145 - -0.6 554,145 - -1.3 554,553 + MPMX19_05826 0.44 -0.5 554,553 + MPMX19_05826 0.44 +1.0 554,553 + MPMX19_05826 0.44 -1.5 554,553 + MPMX19_05826 0.44 -0.3 554,553 + MPMX19_05826 0.44 +1.0 554,554 - MPMX19_05826 0.44 +1.1 554,554 - MPMX19_05826 0.44 +0.9 554,554 - MPMX19_05826 0.44 -1.7 554,554 - MPMX19_05826 0.44 -1.5 554,554 - MPMX19_05826 0.44 -1.7 554,554 - MPMX19_05826 0.44 -0.3 554,998 + +0.9 554,998 + -0.3 554,998 + +0.3 554,999 - +0.3 554,999 - +0.8 554,999 - +1.1 554,999 - -0.7 555,259 + MPMX19_05827 0.23 +0.3 555,259 + MPMX19_05827 0.23 -0.6 555,259 + MPMX19_05827 0.23 -0.9 555,260 - MPMX19_05827 0.23 +0.7 555,260 - MPMX19_05827 0.23 +1.3 555,260 - MPMX19_05827 0.23 +0.3 555,260 - MPMX19_05827 0.23 +0.3 555,292 + MPMX19_05827 0.25 +0.9 555,292 + MPMX19_05827 0.25 -0.1 555,292 + MPMX19_05827 0.25 -1.0 555,292 + MPMX19_05827 0.25 +0.4 555,292 + MPMX19_05827 0.25 +0.4 555,292 + MPMX19_05827 0.25 -0.7 555,292 + MPMX19_05827 0.25 +1.3 555,293 - MPMX19_05827 0.25 +0.3 555,293 - MPMX19_05827 0.25 +0.3 555,293 - MPMX19_05827 0.25 +0.1 555,293 - MPMX19_05827 0.25 +3.6 555,293 - MPMX19_05827 0.25 +0.9 555,293 - MPMX19_05827 0.25 -0.7 555,520 + MPMX19_05827 0.38 +0.3 555,520 + MPMX19_05827 0.38 +0.3 555,521 - MPMX19_05827 0.38 -0.3 555,521 - MPMX19_05827 0.38 +2.3 555,559 + MPMX19_05827 0.40 +0.3 555,559 + MPMX19_05827 0.40 -1.0 555,559 + MPMX19_05827 0.40 +1.1 555,559 + MPMX19_05827 0.40 +0.2 555,559 + MPMX19_05827 0.40 +0.9 555,559 + MPMX19_05827 0.40 +1.3 555,559 + MPMX19_05827 0.40 +0.4 555,559 + MPMX19_05827 0.40 +0.7 555,559 + MPMX19_05827 0.40 +1.3 555,559 + MPMX19_05827 0.40 +0.3 555,559 + MPMX19_05827 0.40 +0.1 555,559 + MPMX19_05827 0.40 +1.3 555,559 + MPMX19_05827 0.40 +0.3 555,559 + MPMX19_05827 0.40 +1.0 555,560 - MPMX19_05827 0.40 -1.2 555,560 - MPMX19_05827 0.40 +0.5 555,560 - MPMX19_05827 0.40 +1.1 555,560 - MPMX19_05827 0.40 +0.7 555,560 - MPMX19_05827 0.40 -0.7 555,560 - MPMX19_05827 0.40 +1.7 555,560 - MPMX19_05827 0.40 -0.3 555,560 - MPMX19_05827 0.40 -0.0 555,560 - MPMX19_05827 0.40 -0.3 555,560 - MPMX19_05827 0.40 +0.3 555,560 - MPMX19_05827 0.40 -1.0 555,560 - MPMX19_05827 0.40 +1.3 555,560 - MPMX19_05827 0.40 +1.7 555,560 - MPMX19_05827 0.40 -0.9 555,751 + MPMX19_05827 0.51 -0.7 555,751 + MPMX19_05827 0.51 -0.9 555,751 + MPMX19_05827 0.51 +1.1 555,751 + MPMX19_05827 0.51 +0.3 555,751 + MPMX19_05827 0.51 -0.3 555,751 + MPMX19_05827 0.51 +1.3 555,751 + MPMX19_05827 0.51 +1.5 555,751 + MPMX19_05827 0.51 -0.7 555,751 + MPMX19_05827 0.51 +0.7 555,751 + MPMX19_05827 0.51 -1.3 555,751 + MPMX19_05827 0.51 -0.6 555,751 + MPMX19_05827 0.51 -2.3 555,751 + MPMX19_05827 0.51 +1.7 555,751 + MPMX19_05827 0.51 -0.4 555,751 + MPMX19_05827 0.51 +0.3 555,752 - MPMX19_05827 0.51 -1.7 555,752 - MPMX19_05827 0.51 +0.3 555,752 - MPMX19_05827 0.51 -0.9 555,752 - MPMX19_05827 0.51 -0.7 555,752 - MPMX19_05827 0.51 -0.7 555,752 - MPMX19_05827 0.51 +0.3 555,752 - MPMX19_05827 0.51 +0.6 555,752 - MPMX19_05827 0.51 -0.7 555,752 - MPMX19_05827 0.51 +0.4 555,752 - MPMX19_05827 0.51 +0.5 555,752 - MPMX19_05827 0.51 -0.5 555,826 + MPMX19_05827 0.55 +1.3 555,826 + MPMX19_05827 0.55 -0.5 555,826 + MPMX19_05827 0.55 +0.3 555,827 - MPMX19_05827 0.55 -0.9 555,827 - MPMX19_05827 0.55 -0.5 555,827 - MPMX19_05827 0.55 -0.1 555,827 - MPMX19_05827 0.55 +0.7 555,827 - MPMX19_05827 0.55 -0.3 555,988 + MPMX19_05827 0.64 +0.7 555,988 + MPMX19_05827 0.64 -0.3 555,988 + MPMX19_05827 0.64 +0.3 555,989 - MPMX19_05827 0.64 +0.5 556,002 - MPMX19_05827 0.65 +2.0 556,045 + MPMX19_05827 0.67 +0.1 556,045 + MPMX19_05827 0.67 +0.0 556,046 - MPMX19_05827 0.67 +0.3 556,046 - MPMX19_05827 0.67 +0.7 556,069 + MPMX19_05827 0.69 -2.2 556,069 + MPMX19_05827 0.69 +0.3 556,070 - MPMX19_05827 0.69 -1.9 556,070 - MPMX19_05827 0.69 -0.5 556,096 + MPMX19_05827 0.70 +0.7 556,097 - MPMX19_05827 0.70 +0.9 556,097 - MPMX19_05827 0.70 +0.5 556,097 - MPMX19_05827 0.70 -0.3 556,126 + MPMX19_05827 0.72 +1.3 556,126 + MPMX19_05827 0.72 -1.5 556,126 + MPMX19_05827 0.72 -1.7 556,127 - MPMX19_05827 0.72 +0.3 556,127 - MPMX19_05827 0.72 +1.3 556,169 - MPMX19_05827 0.74 +0.3 556,169 - MPMX19_05827 0.74 +0.4 556,390 + MPMX19_05827 0.87 -0.9 556,390 + MPMX19_05827 0.87 +0.7 556,390 + MPMX19_05827 0.87 +0.1 556,390 + MPMX19_05827 0.87 -0.5 556,390 + MPMX19_05827 0.87 +1.7 556,390 + MPMX19_05827 0.87 -1.3 556,390 + MPMX19_05827 0.87 -0.7 556,390 + MPMX19_05827 0.87 -0.7 556,390 + MPMX19_05827 0.87 -0.9 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 -0.4 556,390 + MPMX19_05827 0.87 +0.4 556,390 + MPMX19_05827 0.87 -0.1 556,390 + MPMX19_05827 0.87 +0.1 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 -0.0 556,390 + MPMX19_05827 0.87 -0.5 556,390 + MPMX19_05827 0.87 -1.1 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 -0.7 556,390 + MPMX19_05827 0.87 +0.8 556,390 + MPMX19_05827 0.87 +0.5 556,390 + MPMX19_05827 0.87 +2.9 556,391 - MPMX19_05827 0.87 +1.5 556,391 - MPMX19_05827 0.87 +1.0 556,391 - MPMX19_05827 0.87 -0.5 556,391 - MPMX19_05827 0.87 +0.9 556,391 - MPMX19_05827 0.87 -0.5 556,391 - MPMX19_05827 0.87 -1.5 556,391 - MPMX19_05827 0.87 +0.3 556,391 - MPMX19_05827 0.87 +0.8 556,391 - MPMX19_05827 0.87 -0.5 556,391 - MPMX19_05827 0.87 +0.9 556,391 - MPMX19_05827 0.87 +1.8 556,391 - MPMX19_05827 0.87 -0.1 556,391 - MPMX19_05827 0.87 +1.3 556,391 - MPMX19_05827 0.87 +0.3 556,391 - MPMX19_05827 0.87 +0.5 556,391 - MPMX19_05827 0.87 +0.3 556,391 - MPMX19_05827 0.87 -0.7 556,641 + +1.3 556,641 + +0.5 556,641 + -0.3 556,641 + -0.7 556,641 + -1.5 556,641 + -0.1 556,641 + -0.3 556,641 + +0.1 556,641 + -2.2 556,641 + -0.3 556,642 - -1.5 556,642 - -0.2 556,642 - -2.0 556,642 - -0.5 556,642 - -0.3 556,642 - -0.7 556,642 - -0.4 556,642 - -0.0 556,642 - -0.3 556,642 - -1.9 556,642 - -1.0 556,702 + -2.2 556,702 + -0.3 556,702 + +0.9 556,703 - -1.9 556,703 - -0.7 556,796 + -0.9 556,796 + -0.7 556,796 + +0.1 556,797 - -0.0 556,797 - +0.2 556,819 - -1.5 556,819 - -0.3 556,819 - +0.3 556,819 - -0.3
Or see this region's nucleotide sequence