Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05788 and MPMX19_05789 are separated by 45 nucleotides MPMX19_05789 and MPMX19_05790 are separated by 69 nucleotides MPMX19_05790 and MPMX19_05791 are separated by 83 nucleotides
MPMX19_05788: MPMX19_05788 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 510,987 to 511,823
_05788
MPMX19_05789: MPMX19_05789 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 511,869 to 512,627
_05789
MPMX19_05790: MPMX19_05790 - hypothetical protein, at 512,697 to 513,080
_05790
MPMX19_05791: MPMX19_05791 - HTH-type transcriptional repressor RspR, at 513,164 to 513,934
_05791
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.851 kb on + strand at 511.852 kb on - strand at 511.852 kb on - strand at 511.852 kb on - strand at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.337 kb on + strand, within MPMX19_05789 at 512.338 kb on - strand, within MPMX19_05789 at 512.338 kb on - strand, within MPMX19_05789 at 512.338 kb on - strand, within MPMX19_05789 at 512.338 kb on - strand, within MPMX19_05789 at 512.338 kb on - strand, within MPMX19_05789 at 512.338 kb on - strand, within MPMX19_05789 at 512.433 kb on + strand, within MPMX19_05789 at 512.433 kb on + strand, within MPMX19_05789 at 512.433 kb on + strand, within MPMX19_05789 at 512.433 kb on + strand, within MPMX19_05789 at 512.433 kb on + strand, within MPMX19_05789 at 512.434 kb on - strand, within MPMX19_05789 at 512.434 kb on - strand, within MPMX19_05789 at 512.434 kb on - strand, within MPMX19_05789 at 512.434 kb on - strand, within MPMX19_05789 at 512.577 kb on + strand at 512.577 kb on + strand at 512.577 kb on + strand at 512.577 kb on + strand at 512.577 kb on + strand at 512.577 kb on + strand at 512.577 kb on + strand at 512.577 kb on + strand at 512.578 kb on - strand at 512.578 kb on - strand at 512.578 kb on - strand at 512.578 kb on - strand at 512.578 kb on - strand at 512.578 kb on - strand at 512.790 kb on + strand, within MPMX19_05790 at 512.790 kb on + strand, within MPMX19_05790 at 512.790 kb on + strand, within MPMX19_05790 at 512.790 kb on + strand, within MPMX19_05790 at 512.790 kb on + strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.791 kb on - strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.946 kb on + strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 512.947 kb on - strand, within MPMX19_05790 at 513.054 kb on + strand at 513.054 kb on + strand at 513.054 kb on + strand at 513.054 kb on + strand at 513.054 kb on + strand at 513.054 kb on + strand at 513.055 kb on - strand at 513.078 kb on + strand at 513.078 kb on + strand at 513.078 kb on + strand at 513.079 kb on - strand at 513.079 kb on - strand at 513.079 kb on - strand at 513.165 kb on + strand at 513.165 kb on + strand at 513.165 kb on + strand at 513.165 kb on + strand at 513.165 kb on + strand at 513.166 kb on - strand at 513.192 kb on + strand at 513.192 kb on + strand at 513.192 kb on + strand at 513.201 kb on + strand at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.477 kb on + strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.478 kb on - strand, within MPMX19_05791 at 513.564 kb on + strand, within MPMX19_05791 at 513.565 kb on - strand, within MPMX19_05791 at 513.565 kb on - strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.729 kb on + strand, within MPMX19_05791 at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.958 kb on + strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 513.959 kb on - strand at 514.017 kb on + strand at 514.017 kb on + strand at 514.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 511,743 + +0.2 511,743 + -0.3 511,743 + +0.1 511,743 + -0.1 511,743 + +2.3 511,743 + -1.3 511,743 + -0.1 511,743 + +1.3 511,743 + +1.5 511,743 + -0.3 511,744 - +0.3 511,744 - -0.1 511,744 - +0.4 511,744 - -0.7 511,744 - -1.7 511,744 - +0.5 511,744 - +0.1 511,744 - -1.0 511,744 - +0.1 511,744 - +0.3 511,744 - +0.5 511,744 - +1.0 511,744 - -1.0 511,744 - -0.3 511,744 - -2.2 511,744 - -0.3 511,744 - -0.4 511,744 - -0.0 511,744 - -0.0 511,851 + -1.0 511,852 - -0.3 511,852 - -1.2 511,852 - -1.0 512,337 + MPMX19_05789 0.62 +0.3 512,337 + MPMX19_05789 0.62 +0.5 512,337 + MPMX19_05789 0.62 -1.0 512,337 + MPMX19_05789 0.62 -0.7 512,337 + MPMX19_05789 0.62 +0.2 512,337 + MPMX19_05789 0.62 -1.7 512,337 + MPMX19_05789 0.62 +1.3 512,337 + MPMX19_05789 0.62 -0.0 512,337 + MPMX19_05789 0.62 -0.0 512,337 + MPMX19_05789 0.62 -0.6 512,338 - MPMX19_05789 0.62 -0.2 512,338 - MPMX19_05789 0.62 -0.3 512,338 - MPMX19_05789 0.62 -0.2 512,338 - MPMX19_05789 0.62 -0.1 512,338 - MPMX19_05789 0.62 -1.5 512,338 - MPMX19_05789 0.62 -1.5 512,433 + MPMX19_05789 0.74 -1.5 512,433 + MPMX19_05789 0.74 +0.1 512,433 + MPMX19_05789 0.74 -2.2 512,433 + MPMX19_05789 0.74 -2.6 512,433 + MPMX19_05789 0.74 +0.3 512,434 - MPMX19_05789 0.74 -0.3 512,434 - MPMX19_05789 0.74 -1.5 512,434 - MPMX19_05789 0.74 -0.7 512,434 - MPMX19_05789 0.74 -1.0 512,577 + +0.7 512,577 + +1.7 512,577 + -0.5 512,577 + +1.1 512,577 + -0.5 512,577 + -0.5 512,577 + -0.3 512,577 + +0.9 512,578 - +0.5 512,578 - +2.3 512,578 - -0.3 512,578 - -0.4 512,578 - -0.3 512,578 - +0.3 512,790 + MPMX19_05790 0.24 +0.1 512,790 + MPMX19_05790 0.24 +0.8 512,790 + MPMX19_05790 0.24 -2.2 512,790 + MPMX19_05790 0.24 -0.3 512,790 + MPMX19_05790 0.24 -1.2 512,791 - MPMX19_05790 0.24 +0.3 512,791 - MPMX19_05790 0.24 -0.4 512,791 - MPMX19_05790 0.24 +0.1 512,791 - MPMX19_05790 0.24 -1.2 512,791 - MPMX19_05790 0.24 +1.0 512,791 - MPMX19_05790 0.24 +0.5 512,791 - MPMX19_05790 0.24 +0.3 512,946 + MPMX19_05790 0.65 -0.3 512,946 + MPMX19_05790 0.65 -0.1 512,946 + MPMX19_05790 0.65 -0.1 512,946 + MPMX19_05790 0.65 -0.1 512,946 + MPMX19_05790 0.65 +0.3 512,946 + MPMX19_05790 0.65 -0.3 512,946 + MPMX19_05790 0.65 +0.9 512,946 + MPMX19_05790 0.65 -1.5 512,947 - MPMX19_05790 0.65 +0.7 512,947 - MPMX19_05790 0.65 +0.1 512,947 - MPMX19_05790 0.65 +0.1 512,947 - MPMX19_05790 0.65 -0.1 512,947 - MPMX19_05790 0.65 -1.3 512,947 - MPMX19_05790 0.65 -1.8 512,947 - MPMX19_05790 0.65 +1.3 512,947 - MPMX19_05790 0.65 +0.0 512,947 - MPMX19_05790 0.65 -1.8 513,054 + +0.5 513,054 + +0.9 513,054 + -0.8 513,054 + -0.8 513,054 + -0.9 513,054 + -0.3 513,055 - -0.7 513,078 + +0.7 513,078 + +0.7 513,078 + -0.3 513,079 - -0.2 513,079 - -0.3 513,079 - -0.0 513,165 + -0.1 513,165 + -0.9 513,165 + -1.1 513,165 + -0.5 513,165 + -1.0 513,166 - +0.3 513,192 + +0.1 513,192 + +0.4 513,192 + -0.8 513,201 + +0.9 513,477 + MPMX19_05791 0.41 -1.9 513,477 + MPMX19_05791 0.41 +0.6 513,477 + MPMX19_05791 0.41 +1.0 513,477 + MPMX19_05791 0.41 +0.5 513,477 + MPMX19_05791 0.41 -0.1 513,477 + MPMX19_05791 0.41 -2.4 513,477 + MPMX19_05791 0.41 -2.9 513,477 + MPMX19_05791 0.41 +1.3 513,477 + MPMX19_05791 0.41 -1.3 513,477 + MPMX19_05791 0.41 -1.6 513,477 + MPMX19_05791 0.41 +0.5 513,477 + MPMX19_05791 0.41 -1.0 513,477 + MPMX19_05791 0.41 -0.9 513,477 + MPMX19_05791 0.41 -1.5 513,477 + MPMX19_05791 0.41 -0.3 513,477 + MPMX19_05791 0.41 -0.0 513,477 + MPMX19_05791 0.41 -1.4 513,477 + MPMX19_05791 0.41 -0.7 513,477 + MPMX19_05791 0.41 +0.3 513,477 + MPMX19_05791 0.41 +1.5 513,478 - MPMX19_05791 0.41 -0.7 513,478 - MPMX19_05791 0.41 -1.4 513,478 - MPMX19_05791 0.41 -1.0 513,478 - MPMX19_05791 0.41 -0.7 513,478 - MPMX19_05791 0.41 +0.9 513,478 - MPMX19_05791 0.41 +0.9 513,478 - MPMX19_05791 0.41 -1.7 513,478 - MPMX19_05791 0.41 -0.7 513,478 - MPMX19_05791 0.41 +0.7 513,478 - MPMX19_05791 0.41 +1.1 513,478 - MPMX19_05791 0.41 -0.7 513,478 - MPMX19_05791 0.41 -0.9 513,478 - MPMX19_05791 0.41 -0.3 513,478 - MPMX19_05791 0.41 +1.0 513,478 - MPMX19_05791 0.41 +1.3 513,478 - MPMX19_05791 0.41 -1.5 513,478 - MPMX19_05791 0.41 -2.0 513,478 - MPMX19_05791 0.41 -0.7 513,478 - MPMX19_05791 0.41 -2.7 513,478 - MPMX19_05791 0.41 +0.7 513,478 - MPMX19_05791 0.41 -0.7 513,564 + MPMX19_05791 0.52 -0.7 513,565 - MPMX19_05791 0.52 -0.3 513,565 - MPMX19_05791 0.52 -0.7 513,729 + MPMX19_05791 0.73 +0.1 513,729 + MPMX19_05791 0.73 -0.7 513,729 + MPMX19_05791 0.73 +0.1 513,729 + MPMX19_05791 0.73 -0.4 513,729 + MPMX19_05791 0.73 -0.3 513,729 + MPMX19_05791 0.73 -0.5 513,729 + MPMX19_05791 0.73 +1.3 513,729 + MPMX19_05791 0.73 -1.0 513,729 + MPMX19_05791 0.73 -0.2 513,729 + MPMX19_05791 0.73 +3.6 513,729 + MPMX19_05791 0.73 +2.3 513,958 + -0.0 513,958 + +0.7 513,958 + +1.5 513,958 + -0.7 513,958 + -2.2 513,958 + -1.5 513,958 + +0.9 513,958 + -0.7 513,958 + -0.3 513,958 + -1.2 513,958 + -0.3 513,958 + -1.0 513,958 + -0.7 513,958 + -1.0 513,958 + +0.5 513,958 + +0.9 513,958 + -0.7 513,958 + -0.6 513,958 + +0.3 513,958 + +0.3 513,959 - -1.3 513,959 - -0.5 513,959 - -1.3 513,959 - -0.7 513,959 - -0.1 513,959 - -0.3 513,959 - -0.3 513,959 - -1.3 513,959 - -0.9 513,959 - -1.7 513,959 - -0.4 513,959 - +0.5 513,959 - -1.4 513,959 - +0.1 513,959 - +0.5 514,017 + +0.3 514,017 + -1.3 514,018 - -1.5
Or see this region's nucleotide sequence