Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05737

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05735 and MPMX19_05736 are separated by 76 nucleotidesMPMX19_05736 and MPMX19_05737 overlap by 4 nucleotidesMPMX19_05737 and MPMX19_05738 overlap by 38 nucleotidesMPMX19_05738 and MPMX19_05739 are separated by 16 nucleotides MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427 _05735 MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274 _05736 MPMX19_05737: MPMX19_05737 - hypothetical protein, at 454,271 to 454,717 _05737 MPMX19_05738: MPMX19_05738 - hypothetical protein, at 454,680 to 455,207 _05738 MPMX19_05739: MPMX19_05739 - Tuberculostearic acid methyltransferase UfaA1, at 455,224 to 456,486 _05739 Position (kb) 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 453.450 kb on - strandat 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.849 kb on + strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.850 kb on - strand, within MPMX19_05736at 453.851 kb on + strand, within MPMX19_05736at 453.851 kb on + strand, within MPMX19_05736at 453.851 kb on + strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.852 kb on - strand, within MPMX19_05736at 453.969 kb on + strand, within MPMX19_05736at 453.969 kb on + strand, within MPMX19_05736at 453.969 kb on + strand, within MPMX19_05736at 453.970 kb on - strand, within MPMX19_05736at 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.239 kb on + strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.240 kb on - strandat 454.643 kb on + strand, within MPMX19_05737at 454.643 kb on + strand, within MPMX19_05737at 454.643 kb on + strand, within MPMX19_05737at 454.643 kb on + strand, within MPMX19_05737at 454.643 kb on + strand, within MPMX19_05737at 454.643 kb on + strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.644 kb on - strand, within MPMX19_05737at 454.681 kb on + strandat 454.681 kb on + strandat 454.682 kb on - strandat 454.682 kb on - strandat 454.682 kb on - strandat 454.682 kb on - strandat 454.792 kb on + strand, within MPMX19_05738at 454.793 kb on - strand, within MPMX19_05738at 454.793 kb on - strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.894 kb on + strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.895 kb on - strand, within MPMX19_05738at 454.966 kb on + strand, within MPMX19_05738at 454.966 kb on + strand, within MPMX19_05738at 454.966 kb on + strand, within MPMX19_05738at 454.966 kb on + strand, within MPMX19_05738at 454.966 kb on + strand, within MPMX19_05738at 454.966 kb on + strand, within MPMX19_05738at 454.967 kb on - strand, within MPMX19_05738at 454.967 kb on - strand, within MPMX19_05738at 454.967 kb on - strand, within MPMX19_05738at 454.967 kb on - strand, within MPMX19_05738at 455.027 kb on - strand, within MPMX19_05738at 455.155 kb on + strandat 455.155 kb on + strandat 455.156 kb on - strandat 455.156 kb on - strandat 455.156 kb on - strandat 455.156 kb on - strandat 455.288 kb on + strandat 455.288 kb on + strandat 455.288 kb on + strandat 455.288 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.297 kb on + strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.298 kb on - strandat 455.300 kb on + strandat 455.300 kb on + strandat 455.300 kb on + strandat 455.300 kb on + strandat 455.301 kb on - strandat 455.301 kb on - strandat 455.399 kb on + strand, within MPMX19_05739at 455.399 kb on + strand, within MPMX19_05739at 455.399 kb on + strand, within MPMX19_05739at 455.399 kb on + strand, within MPMX19_05739at 455.399 kb on + strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.400 kb on - strand, within MPMX19_05739at 455.532 kb on - strand, within MPMX19_05739at 455.532 kb on - strand, within MPMX19_05739at 455.532 kb on - strand, within MPMX19_05739at 455.618 kb on + strand, within MPMX19_05739at 455.618 kb on + strand, within MPMX19_05739at 455.619 kb on - strand, within MPMX19_05739at 455.619 kb on - strand, within MPMX19_05739

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
453,450 - -0.5
453,849 + MPMX19_05736 0.45 +0.2
453,849 + MPMX19_05736 0.45 -0.0
453,849 + MPMX19_05736 0.45 -1.4
453,849 + MPMX19_05736 0.45 -0.4
453,849 + MPMX19_05736 0.45 -0.5
453,849 + MPMX19_05736 0.45 -0.6
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 -1.4
453,849 + MPMX19_05736 0.45 -2.7
453,849 + MPMX19_05736 0.45 -0.3
453,849 + MPMX19_05736 0.45 -1.7
453,849 + MPMX19_05736 0.45 +0.7
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 -0.3
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 -0.7
453,849 + MPMX19_05736 0.45 -0.1
453,849 + MPMX19_05736 0.45 +1.3
453,849 + MPMX19_05736 0.45 -0.3
453,849 + MPMX19_05736 0.45 -1.3
453,849 + MPMX19_05736 0.45 +1.0
453,849 + MPMX19_05736 0.45 +0.6
453,849 + MPMX19_05736 0.45 -0.0
453,849 + MPMX19_05736 0.45 -1.7
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 -0.8
453,849 + MPMX19_05736 0.45 -1.1
453,849 + MPMX19_05736 0.45 -0.0
453,849 + MPMX19_05736 0.45 -0.8
453,849 + MPMX19_05736 0.45 -1.9
453,849 + MPMX19_05736 0.45 -0.3
453,849 + MPMX19_05736 0.45 -1.0
453,849 + MPMX19_05736 0.45 -2.6
453,849 + MPMX19_05736 0.45 -1.5
453,849 + MPMX19_05736 0.45 -1.3
453,849 + MPMX19_05736 0.45 -0.3
453,849 + MPMX19_05736 0.45 -2.4
453,849 + MPMX19_05736 0.45 -0.1
453,849 + MPMX19_05736 0.45 -0.5
453,849 + MPMX19_05736 0.45 -1.3
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -1.5
453,850 - MPMX19_05736 0.45 -1.3
453,850 - MPMX19_05736 0.45 +0.1
453,850 - MPMX19_05736 0.45 -0.7
453,850 - MPMX19_05736 0.45 -0.8
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 -1.5
453,850 - MPMX19_05736 0.45 -0.0
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 +0.3
453,850 - MPMX19_05736 0.45 -1.5
453,850 - MPMX19_05736 0.45 -2.1
453,850 - MPMX19_05736 0.45 +0.7
453,850 - MPMX19_05736 0.45 -0.6
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 -0.6
453,850 - MPMX19_05736 0.45 -0.0
453,850 - MPMX19_05736 0.45 -2.5
453,850 - MPMX19_05736 0.45 -1.5
453,850 - MPMX19_05736 0.45 +0.3
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 +1.9
453,850 - MPMX19_05736 0.45 -1.7
453,850 - MPMX19_05736 0.45 -1.0
453,850 - MPMX19_05736 0.45 -1.6
453,850 - MPMX19_05736 0.45 +0.3
453,850 - MPMX19_05736 0.45 +0.5
453,850 - MPMX19_05736 0.45 +1.3
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 +0.3
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 -0.3
453,850 - MPMX19_05736 0.45 +0.7
453,850 - MPMX19_05736 0.45 -0.4
453,850 - MPMX19_05736 0.45 -2.7
453,850 - MPMX19_05736 0.45 +1.3
453,850 - MPMX19_05736 0.45 +0.9
453,850 - MPMX19_05736 0.45 -0.8
453,850 - MPMX19_05736 0.45 -1.4
453,850 - MPMX19_05736 0.45 -0.7
453,851 + MPMX19_05736 0.45 -1.3
453,851 + MPMX19_05736 0.45 -1.3
453,851 + MPMX19_05736 0.45 -1.0
453,852 - MPMX19_05736 0.45 +0.9
453,852 - MPMX19_05736 0.45 -1.7
453,852 - MPMX19_05736 0.45 -0.6
453,852 - MPMX19_05736 0.45 -0.8
453,852 - MPMX19_05736 0.45 -0.0
453,852 - MPMX19_05736 0.45 -0.3
453,852 - MPMX19_05736 0.45 -0.6
453,852 - MPMX19_05736 0.45 +0.1
453,852 - MPMX19_05736 0.45 -1.5
453,969 + MPMX19_05736 0.60 -0.7
453,969 + MPMX19_05736 0.60 -0.9
453,969 + MPMX19_05736 0.60 -0.7
453,970 - MPMX19_05736 0.60 -1.5
454,239 + +1.3
454,239 + -0.7
454,239 + -2.5
454,239 + -0.5
454,239 + -2.6
454,239 + -1.5
454,239 + +0.3
454,240 - -1.9
454,240 - -1.7
454,240 - -0.7
454,240 - -1.6
454,240 - -1.1
454,240 - -1.4
454,643 + MPMX19_05737 0.83 +0.6
454,643 + MPMX19_05737 0.83 -1.2
454,643 + MPMX19_05737 0.83 -2.2
454,643 + MPMX19_05737 0.83 -1.3
454,643 + MPMX19_05737 0.83 -1.0
454,643 + MPMX19_05737 0.83 -1.0
454,644 - MPMX19_05737 0.83 -0.3
454,644 - MPMX19_05737 0.83 +1.0
454,644 - MPMX19_05737 0.83 -0.6
454,644 - MPMX19_05737 0.83 +1.0
454,644 - MPMX19_05737 0.83 -0.7
454,644 - MPMX19_05737 0.83 +1.3
454,644 - MPMX19_05737 0.83 -0.3
454,644 - MPMX19_05737 0.83 -1.2
454,644 - MPMX19_05737 0.83 -1.3
454,644 - MPMX19_05737 0.83 -0.4
454,644 - MPMX19_05737 0.83 +0.3
454,644 - MPMX19_05737 0.83 -0.3
454,681 + -0.7
454,681 + -2.0
454,682 - -0.9
454,682 - -0.8
454,682 - -0.3
454,682 - +0.9
454,792 + MPMX19_05738 0.21 -0.0
454,793 - MPMX19_05738 0.21 -0.7
454,793 - MPMX19_05738 0.21 +0.7
454,894 + MPMX19_05738 0.41 -0.3
454,894 + MPMX19_05738 0.41 +0.3
454,894 + MPMX19_05738 0.41 +0.7
454,894 + MPMX19_05738 0.41 +0.7
454,894 + MPMX19_05738 0.41 -1.0
454,894 + MPMX19_05738 0.41 +1.3
454,894 + MPMX19_05738 0.41 -0.3
454,894 + MPMX19_05738 0.41 -1.3
454,894 + MPMX19_05738 0.41 -2.6
454,894 + MPMX19_05738 0.41 -2.2
454,894 + MPMX19_05738 0.41 -0.0
454,895 - MPMX19_05738 0.41 +0.3
454,895 - MPMX19_05738 0.41 -0.7
454,895 - MPMX19_05738 0.41 -2.0
454,895 - MPMX19_05738 0.41 -2.0
454,895 - MPMX19_05738 0.41 -0.7
454,895 - MPMX19_05738 0.41 +0.1
454,895 - MPMX19_05738 0.41 +0.7
454,895 - MPMX19_05738 0.41 -0.5
454,895 - MPMX19_05738 0.41 -1.5
454,895 - MPMX19_05738 0.41 +0.3
454,966 + MPMX19_05738 0.54 -0.6
454,966 + MPMX19_05738 0.54 +0.3
454,966 + MPMX19_05738 0.54 -0.1
454,966 + MPMX19_05738 0.54 -1.7
454,966 + MPMX19_05738 0.54 -1.0
454,966 + MPMX19_05738 0.54 +0.5
454,967 - MPMX19_05738 0.54 -1.0
454,967 - MPMX19_05738 0.54 -0.0
454,967 - MPMX19_05738 0.54 -1.5
454,967 - MPMX19_05738 0.54 -0.0
455,027 - MPMX19_05738 0.66 -0.9
455,155 + -1.0
455,155 + -1.0
455,156 - -0.3
455,156 - -0.4
455,156 - +0.3
455,156 - -0.3
455,288 + -1.3
455,288 + -2.2
455,288 + -2.6
455,288 + -1.0
455,297 + -1.0
455,297 + -1.3
455,297 + -2.2
455,297 + -1.3
455,297 + -1.3
455,297 + -2.0
455,297 + +1.0
455,297 + -0.3
455,297 + +0.5
455,297 + -0.1
455,297 + +1.7
455,297 + -1.2
455,297 + +1.6
455,297 + -0.7
455,297 + -0.7
455,297 + -1.0
455,298 - -0.9
455,298 - -1.0
455,298 - -1.5
455,298 - -1.0
455,298 - +0.9
455,298 - -0.0
455,298 - +2.0
455,298 - -1.8
455,298 - -1.7
455,300 + +0.3
455,300 + -3.4
455,300 + +0.3
455,300 + -0.7
455,301 - +0.4
455,301 - -1.9
455,399 + MPMX19_05739 0.14 -1.0
455,399 + MPMX19_05739 0.14 +0.4
455,399 + MPMX19_05739 0.14 -0.9
455,399 + MPMX19_05739 0.14 -0.9
455,399 + MPMX19_05739 0.14 -2.7
455,400 - MPMX19_05739 0.14 +0.3
455,400 - MPMX19_05739 0.14 -1.2
455,400 - MPMX19_05739 0.14 -1.5
455,400 - MPMX19_05739 0.14 -1.0
455,400 - MPMX19_05739 0.14 -2.2
455,400 - MPMX19_05739 0.14 -1.9
455,400 - MPMX19_05739 0.14 -0.3
455,532 - MPMX19_05739 0.24 -0.3
455,532 - MPMX19_05739 0.24 -0.3
455,532 - MPMX19_05739 0.24 -0.7
455,618 + MPMX19_05739 0.31 -0.4
455,618 + MPMX19_05739 0.31 -1.0
455,619 - MPMX19_05739 0.31 -1.0
455,619 - MPMX19_05739 0.31 -1.7

Or see this region's nucleotide sequence