Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05732 and MPMX19_05733 overlap by 4 nucleotides MPMX19_05733 and MPMX19_05734 are separated by 5 nucleotides MPMX19_05734 and MPMX19_05735 are separated by 366 nucleotides MPMX19_05735 and MPMX19_05736 are separated by 76 nucleotides
MPMX19_05732: MPMX19_05732 - hypothetical protein, at 450,553 to 451,422
_05732
MPMX19_05733: MPMX19_05733 - Biopolymer transport protein ExbD, at 451,419 to 451,847
_05733
MPMX19_05734: MPMX19_05734 - Tol-Pal system protein TolQ, at 451,853 to 452,806
_05734
MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427
_05735
MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274
_05736
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2 at 451.465 kb on + strand, within MPMX19_05733 at 451.465 kb on + strand, within MPMX19_05733 at 451.510 kb on + strand, within MPMX19_05733 at 451.855 kb on - strand at 451.855 kb on - strand at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.747 kb on + strand at 452.748 kb on - strand at 452.892 kb on + strand at 453.005 kb on - strand at 453.034 kb on - strand at 453.069 kb on + strand at 453.069 kb on + strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 451,465 + MPMX19_05733 0.11 +0.9 451,465 + MPMX19_05733 0.11 -0.4 451,510 + MPMX19_05733 0.21 -1.2 451,855 - -1.3 451,855 - -1.2 452,037 + MPMX19_05734 0.19 -1.2 452,037 + MPMX19_05734 0.19 +0.1 452,037 + MPMX19_05734 0.19 -2.0 452,037 + MPMX19_05734 0.19 -0.9 452,037 + MPMX19_05734 0.19 +2.0 452,037 + MPMX19_05734 0.19 -1.3 452,037 + MPMX19_05734 0.19 -0.7 452,037 + MPMX19_05734 0.19 -1.4 452,038 - MPMX19_05734 0.19 -1.0 452,038 - MPMX19_05734 0.19 -0.7 452,038 - MPMX19_05734 0.19 -1.0 452,038 - MPMX19_05734 0.19 -2.4 452,038 - MPMX19_05734 0.19 +0.7 452,038 - MPMX19_05734 0.19 -1.4 452,038 - MPMX19_05734 0.19 -1.9 452,038 - MPMX19_05734 0.19 -0.9 452,038 - MPMX19_05734 0.19 -1.3 452,038 - MPMX19_05734 0.19 -1.9 452,038 - MPMX19_05734 0.19 -1.3 452,747 + -0.7 452,748 - -2.2 452,892 + +0.1 453,005 - -2.0 453,034 - +1.3 453,069 + +0.1 453,069 + -1.9 453,070 - +1.9 453,070 - -0.3 453,070 - -1.3 453,070 - +0.7 453,070 - -0.7 453,070 - -0.4 453,450 - -0.5
Or see this region's nucleotide sequence