Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05583

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05582 and MPMX19_05583 are separated by 112 nucleotidesMPMX19_05583 and MPMX19_05584 are separated by 309 nucleotides MPMX19_05582: MPMX19_05582 - Anaerobic nitric oxide reductase transcription regulator NorR, at 291,707 to 293,236 _05582 MPMX19_05583: MPMX19_05583 - HTH-type transcriptional regulator TsaQ1/TsaQ2, at 293,349 to 294,161 _05583 MPMX19_05584: MPMX19_05584 - hypothetical protein, at 294,471 to 296,171 _05584 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 292.760 kb on + strand, within MPMX19_05582at 292.760 kb on + strand, within MPMX19_05582at 292.760 kb on + strand, within MPMX19_05582at 292.760 kb on + strand, within MPMX19_05582at 292.760 kb on + strand, within MPMX19_05582at 292.760 kb on + strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.761 kb on - strand, within MPMX19_05582at 292.919 kb on + strand, within MPMX19_05582at 292.919 kb on + strand, within MPMX19_05582at 292.920 kb on - strand, within MPMX19_05582at 292.920 kb on - strand, within MPMX19_05582at 292.920 kb on - strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.949 kb on + strand, within MPMX19_05582at 292.950 kb on - strand, within MPMX19_05582at 292.950 kb on - strand, within MPMX19_05582at 292.950 kb on - strand, within MPMX19_05582at 292.950 kb on - strand, within MPMX19_05582at 292.950 kb on - strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.006 kb on + strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.007 kb on - strand, within MPMX19_05582at 293.195 kb on + strandat 293.195 kb on + strandat 293.195 kb on + strandat 293.195 kb on + strandat 293.195 kb on + strandat 293.196 kb on - strandat 293.196 kb on - strandat 293.196 kb on - strandat 293.196 kb on - strandat 293.196 kb on - strandat 293.234 kb on + strandat 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.538 kb on + strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.539 kb on - strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.559 kb on + strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.560 kb on - strand, within MPMX19_05583at 293.561 kb on - strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.568 kb on + strand, within MPMX19_05583at 293.569 kb on - strand, within MPMX19_05583at 293.569 kb on - strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.589 kb on + strand, within MPMX19_05583at 293.590 kb on - strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.622 kb on + strand, within MPMX19_05583at 293.623 kb on - strand, within MPMX19_05583at 293.623 kb on - strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.739 kb on + strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.740 kb on - strand, within MPMX19_05583at 293.832 kb on + strand, within MPMX19_05583at 293.832 kb on + strand, within MPMX19_05583at 293.832 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.961 kb on + strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 293.962 kb on - strand, within MPMX19_05583at 294.236 kb on + strandat 294.270 kb on + strandat 294.270 kb on + strandat 294.271 kb on - strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.272 kb on + strandat 294.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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292,760 + MPMX19_05582 0.69 -0.3
292,760 + MPMX19_05582 0.69 +1.3
292,760 + MPMX19_05582 0.69 -0.3
292,760 + MPMX19_05582 0.69 -1.7
292,760 + MPMX19_05582 0.69 +1.3
292,760 + MPMX19_05582 0.69 -1.0
292,761 - MPMX19_05582 0.69 -0.5
292,761 - MPMX19_05582 0.69 -0.3
292,761 - MPMX19_05582 0.69 +0.5
292,761 - MPMX19_05582 0.69 +0.3
292,761 - MPMX19_05582 0.69 -1.5
292,761 - MPMX19_05582 0.69 -0.3
292,761 - MPMX19_05582 0.69 +0.7
292,761 - MPMX19_05582 0.69 -1.0
292,761 - MPMX19_05582 0.69 +0.4
292,761 - MPMX19_05582 0.69 +0.7
292,761 - MPMX19_05582 0.69 -1.2
292,761 - MPMX19_05582 0.69 +0.1
292,761 - MPMX19_05582 0.69 -0.3
292,761 - MPMX19_05582 0.69 -0.3
292,761 - MPMX19_05582 0.69 -3.0
292,761 - MPMX19_05582 0.69 +0.2
292,761 - MPMX19_05582 0.69 -1.5
292,761 - MPMX19_05582 0.69 -0.8
292,761 - MPMX19_05582 0.69 -2.0
292,761 - MPMX19_05582 0.69 +0.3
292,761 - MPMX19_05582 0.69 +0.5
292,919 + MPMX19_05582 0.79 +0.3
292,919 + MPMX19_05582 0.79 -0.3
292,920 - MPMX19_05582 0.79 +0.3
292,920 - MPMX19_05582 0.79 -1.1
292,920 - MPMX19_05582 0.79 -2.2
292,949 + MPMX19_05582 0.81 -1.0
292,949 + MPMX19_05582 0.81 -1.2
292,949 + MPMX19_05582 0.81 -1.0
292,949 + MPMX19_05582 0.81 -0.7
292,949 + MPMX19_05582 0.81 -0.0
292,949 + MPMX19_05582 0.81 -1.0
292,949 + MPMX19_05582 0.81 -0.0
292,949 + MPMX19_05582 0.81 -0.0
292,949 + MPMX19_05582 0.81 +0.3
292,950 - MPMX19_05582 0.81 -0.0
292,950 - MPMX19_05582 0.81 -0.7
292,950 - MPMX19_05582 0.81 -1.2
292,950 - MPMX19_05582 0.81 -0.0
292,950 - MPMX19_05582 0.81 +0.4
293,006 + MPMX19_05582 0.85 -1.7
293,006 + MPMX19_05582 0.85 -0.0
293,006 + MPMX19_05582 0.85 +0.7
293,006 + MPMX19_05582 0.85 -0.0
293,006 + MPMX19_05582 0.85 +0.1
293,006 + MPMX19_05582 0.85 +1.0
293,006 + MPMX19_05582 0.85 +0.3
293,006 + MPMX19_05582 0.85 -0.0
293,006 + MPMX19_05582 0.85 -0.7
293,006 + MPMX19_05582 0.85 +0.3
293,006 + MPMX19_05582 0.85 -0.3
293,006 + MPMX19_05582 0.85 +1.7
293,006 + MPMX19_05582 0.85 -1.9
293,006 + MPMX19_05582 0.85 -1.7
293,006 + MPMX19_05582 0.85 -1.3
293,006 + MPMX19_05582 0.85 -0.6
293,006 + MPMX19_05582 0.85 -0.3
293,006 + MPMX19_05582 0.85 +0.3
293,006 + MPMX19_05582 0.85 -0.7
293,006 + MPMX19_05582 0.85 -0.3
293,006 + MPMX19_05582 0.85 +0.3
293,006 + MPMX19_05582 0.85 -0.0
293,006 + MPMX19_05582 0.85 +0.4
293,007 - MPMX19_05582 0.85 -0.7
293,007 - MPMX19_05582 0.85 -0.3
293,007 - MPMX19_05582 0.85 -0.9
293,007 - MPMX19_05582 0.85 -1.9
293,007 - MPMX19_05582 0.85 -0.0
293,007 - MPMX19_05582 0.85 +0.4
293,007 - MPMX19_05582 0.85 +1.9
293,007 - MPMX19_05582 0.85 -1.2
293,007 - MPMX19_05582 0.85 -1.0
293,007 - MPMX19_05582 0.85 -0.3
293,007 - MPMX19_05582 0.85 -1.0
293,007 - MPMX19_05582 0.85 +0.7
293,007 - MPMX19_05582 0.85 -0.9
293,007 - MPMX19_05582 0.85 +0.7
293,007 - MPMX19_05582 0.85 -2.0
293,007 - MPMX19_05582 0.85 -0.3
293,007 - MPMX19_05582 0.85 -2.8
293,007 - MPMX19_05582 0.85 +1.1
293,007 - MPMX19_05582 0.85 +0.3
293,007 - MPMX19_05582 0.85 -0.7
293,007 - MPMX19_05582 0.85 -0.6
293,007 - MPMX19_05582 0.85 -1.5
293,007 - MPMX19_05582 0.85 +0.5
293,007 - MPMX19_05582 0.85 -1.3
293,007 - MPMX19_05582 0.85 -0.7
293,007 - MPMX19_05582 0.85 -0.7
293,007 - MPMX19_05582 0.85 +0.6
293,195 + -0.3
293,195 + -2.5
293,195 + +1.6
293,195 + -1.9
293,195 + +0.2
293,196 - -0.0
293,196 - +1.3
293,196 - -0.7
293,196 - +0.3
293,196 - +0.0
293,234 + -0.9
293,538 + MPMX19_05583 0.23 +1.7
293,538 + MPMX19_05583 0.23 +0.3
293,538 + MPMX19_05583 0.23 +1.3
293,538 + MPMX19_05583 0.23 +1.9
293,538 + MPMX19_05583 0.23 -2.6
293,538 + MPMX19_05583 0.23 -0.3
293,538 + MPMX19_05583 0.23 -1.0
293,538 + MPMX19_05583 0.23 -1.6
293,538 + MPMX19_05583 0.23 -0.3
293,539 - MPMX19_05583 0.23 +0.6
293,539 - MPMX19_05583 0.23 -1.0
293,539 - MPMX19_05583 0.23 +0.5
293,539 - MPMX19_05583 0.23 -1.2
293,539 - MPMX19_05583 0.23 -0.3
293,539 - MPMX19_05583 0.23 +1.5
293,539 - MPMX19_05583 0.23 -0.3
293,539 - MPMX19_05583 0.23 -1.3
293,559 + MPMX19_05583 0.26 +0.1
293,559 + MPMX19_05583 0.26 +0.3
293,559 + MPMX19_05583 0.26 +1.0
293,559 + MPMX19_05583 0.26 -1.3
293,560 - MPMX19_05583 0.26 -2.5
293,560 - MPMX19_05583 0.26 +1.0
293,560 - MPMX19_05583 0.26 -1.3
293,560 - MPMX19_05583 0.26 -2.0
293,560 - MPMX19_05583 0.26 -0.0
293,560 - MPMX19_05583 0.26 -1.5
293,561 - MPMX19_05583 0.26 -0.1
293,568 + MPMX19_05583 0.27 -1.0
293,568 + MPMX19_05583 0.27 -1.0
293,568 + MPMX19_05583 0.27 +0.4
293,568 + MPMX19_05583 0.27 -1.4
293,568 + MPMX19_05583 0.27 -2.2
293,569 - MPMX19_05583 0.27 +0.7
293,569 - MPMX19_05583 0.27 +0.1
293,589 + MPMX19_05583 0.30 -2.2
293,589 + MPMX19_05583 0.30 -1.0
293,589 + MPMX19_05583 0.30 -1.7
293,589 + MPMX19_05583 0.30 -0.0
293,589 + MPMX19_05583 0.30 +0.9
293,590 - MPMX19_05583 0.30 -0.5
293,622 + MPMX19_05583 0.34 +0.3
293,622 + MPMX19_05583 0.34 +0.3
293,622 + MPMX19_05583 0.34 -0.7
293,622 + MPMX19_05583 0.34 +0.6
293,623 - MPMX19_05583 0.34 -1.7
293,623 - MPMX19_05583 0.34 -1.0
293,739 + MPMX19_05583 0.48 -0.4
293,739 + MPMX19_05583 0.48 -0.4
293,739 + MPMX19_05583 0.48 -0.3
293,739 + MPMX19_05583 0.48 -1.0
293,739 + MPMX19_05583 0.48 -0.7
293,739 + MPMX19_05583 0.48 -1.3
293,739 + MPMX19_05583 0.48 +0.7
293,739 + MPMX19_05583 0.48 -1.9
293,739 + MPMX19_05583 0.48 -0.0
293,739 + MPMX19_05583 0.48 +0.2
293,739 + MPMX19_05583 0.48 +1.3
293,740 - MPMX19_05583 0.48 +0.1
293,740 - MPMX19_05583 0.48 -1.3
293,740 - MPMX19_05583 0.48 -0.7
293,740 - MPMX19_05583 0.48 -1.2
293,740 - MPMX19_05583 0.48 +1.3
293,740 - MPMX19_05583 0.48 -0.3
293,740 - MPMX19_05583 0.48 -1.7
293,832 + MPMX19_05583 0.59 +0.6
293,832 + MPMX19_05583 0.59 -0.4
293,832 + MPMX19_05583 0.59 -1.0
293,961 + MPMX19_05583 0.75 +0.3
293,961 + MPMX19_05583 0.75 -0.0
293,961 + MPMX19_05583 0.75 -0.4
293,961 + MPMX19_05583 0.75 -1.0
293,962 - MPMX19_05583 0.75 -2.3
293,962 - MPMX19_05583 0.75 -1.0
293,962 - MPMX19_05583 0.75 +0.3
293,962 - MPMX19_05583 0.75 -0.7
294,236 + -0.7
294,270 + +0.3
294,270 + +0.3
294,271 - -0.3
294,272 + -1.8
294,272 + -0.4
294,272 + +0.5
294,272 + -0.3
294,272 + +0.6
294,273 - +0.6

Or see this region's nucleotide sequence