Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05519

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05518 and MPMX19_05519 are separated by 66 nucleotidesMPMX19_05519 and MPMX19_05520 are separated by 261 nucleotidesMPMX19_05520 and MPMX19_05521 are separated by 112 nucleotides MPMX19_05518: MPMX19_05518 - hypothetical protein, at 223,581 to 226,181 _05518 MPMX19_05519: MPMX19_05519 - LL-diaminopimelate aminotransferase, at 226,248 to 227,504 _05519 MPMX19_05520: MPMX19_05520 - hypothetical protein, at 227,766 to 228,329 _05520 MPMX19_05521: MPMX19_05521 - Nitrogen regulatory protein P-II 2, at 228,442 to 228,780 _05521 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1at 226.203 kb on - strandat 226.203 kb on - strandat 226.203 kb on - strandat 226.370 kb on - strandat 226.370 kb on - strandat 226.475 kb on - strand, within MPMX19_05519at 226.478 kb on - strand, within MPMX19_05519at 226.478 kb on - strand, within MPMX19_05519at 226.478 kb on - strand, within MPMX19_05519at 226.478 kb on - strand, within MPMX19_05519at 226.478 kb on - strand, within MPMX19_05519at 226.529 kb on - strand, within MPMX19_05519at 226.619 kb on - strand, within MPMX19_05519at 226.619 kb on - strand, within MPMX19_05519at 226.619 kb on - strand, within MPMX19_05519at 226.619 kb on - strand, within MPMX19_05519at 226.619 kb on - strand, within MPMX19_05519at 226.619 kb on - strand, within MPMX19_05519at 226.817 kb on - strand, within MPMX19_05519at 226.817 kb on - strand, within MPMX19_05519at 226.847 kb on - strand, within MPMX19_05519at 226.847 kb on - strand, within MPMX19_05519at 226.847 kb on - strand, within MPMX19_05519at 226.847 kb on - strand, within MPMX19_05519at 226.880 kb on - strand, within MPMX19_05519at 226.880 kb on - strand, within MPMX19_05519at 226.880 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 226.928 kb on - strand, within MPMX19_05519at 227.051 kb on - strand, within MPMX19_05519at 227.051 kb on - strand, within MPMX19_05519at 227.051 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.060 kb on - strand, within MPMX19_05519at 227.207 kb on - strand, within MPMX19_05519at 227.270 kb on - strand, within MPMX19_05519at 227.270 kb on - strand, within MPMX19_05519at 227.270 kb on - strand, within MPMX19_05519at 227.270 kb on - strand, within MPMX19_05519at 227.270 kb on - strand, within MPMX19_05519at 227.270 kb on - strand, within MPMX19_05519at 227.589 kb on - strandat 227.589 kb on - strandat 227.677 kb on + strandat 227.677 kb on + strandat 227.678 kb on - strandat 227.692 kb on + strandat 227.692 kb on + strandat 227.693 kb on - strandat 227.709 kb on - strandat 228.165 kb on + strand, within MPMX19_05520at 228.165 kb on + strand, within MPMX19_05520at 228.165 kb on + strand, within MPMX19_05520at 228.166 kb on - strand, within MPMX19_05520at 228.204 kb on + strand, within MPMX19_05520at 228.204 kb on + strand, within MPMX19_05520at 228.204 kb on + strand, within MPMX19_05520at 228.204 kb on + strand, within MPMX19_05520at 228.204 kb on + strand, within MPMX19_05520at 228.204 kb on + strand, within MPMX19_05520at 228.205 kb on - strand, within MPMX19_05520at 228.205 kb on - strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.228 kb on + strand, within MPMX19_05520at 228.229 kb on - strand, within MPMX19_05520at 228.229 kb on - strand, within MPMX19_05520at 228.229 kb on - strand, within MPMX19_05520at 228.229 kb on - strand, within MPMX19_05520at 228.229 kb on - strand, within MPMX19_05520at 228.291 kb on + strandat 228.292 kb on - strandat 228.347 kb on + strandat 228.348 kb on - strandat 228.348 kb on - strandat 228.348 kb on - strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.443 kb on + strandat 228.444 kb on - strandat 228.444 kb on - strandat 228.444 kb on - strandat 228.444 kb on - strandat 228.444 kb on - strandat 228.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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226,203 - -0.5
226,203 - +1.3
226,203 - +0.7
226,370 - -1.5
226,370 - -0.2
226,475 - MPMX19_05519 0.18 -0.7
226,478 - MPMX19_05519 0.18 -0.7
226,478 - MPMX19_05519 0.18 -2.8
226,478 - MPMX19_05519 0.18 -1.3
226,478 - MPMX19_05519 0.18 -0.2
226,478 - MPMX19_05519 0.18 -2.1
226,529 - MPMX19_05519 0.22 -0.5
226,619 - MPMX19_05519 0.30 -2.4
226,619 - MPMX19_05519 0.30 -1.2
226,619 - MPMX19_05519 0.30 +0.7
226,619 - MPMX19_05519 0.30 -1.1
226,619 - MPMX19_05519 0.30 -2.2
226,619 - MPMX19_05519 0.30 -1.1
226,817 - MPMX19_05519 0.45 -1.3
226,817 - MPMX19_05519 0.45 -0.7
226,847 - MPMX19_05519 0.48 -0.3
226,847 - MPMX19_05519 0.48 -1.1
226,847 - MPMX19_05519 0.48 -1.3
226,847 - MPMX19_05519 0.48 -0.7
226,880 - MPMX19_05519 0.50 +0.7
226,880 - MPMX19_05519 0.50 +0.6
226,880 - MPMX19_05519 0.50 -2.3
226,928 - MPMX19_05519 0.54 -0.1
226,928 - MPMX19_05519 0.54 -0.7
226,928 - MPMX19_05519 0.54 -2.9
226,928 - MPMX19_05519 0.54 -1.1
226,928 - MPMX19_05519 0.54 +0.3
226,928 - MPMX19_05519 0.54 -0.7
226,928 - MPMX19_05519 0.54 +0.7
226,928 - MPMX19_05519 0.54 +0.5
226,928 - MPMX19_05519 0.54 -0.3
226,928 - MPMX19_05519 0.54 -1.7
226,928 - MPMX19_05519 0.54 -1.3
226,928 - MPMX19_05519 0.54 -2.5
226,928 - MPMX19_05519 0.54 -0.7
227,051 - MPMX19_05519 0.64 -1.1
227,051 - MPMX19_05519 0.64 -1.8
227,051 - MPMX19_05519 0.64 -1.6
227,060 - MPMX19_05519 0.65 -2.4
227,060 - MPMX19_05519 0.65 -1.2
227,060 - MPMX19_05519 0.65 -1.3
227,060 - MPMX19_05519 0.65 -1.5
227,060 - MPMX19_05519 0.65 -1.3
227,060 - MPMX19_05519 0.65 -1.3
227,060 - MPMX19_05519 0.65 -2.1
227,060 - MPMX19_05519 0.65 -1.4
227,060 - MPMX19_05519 0.65 -0.3
227,060 - MPMX19_05519 0.65 -1.2
227,060 - MPMX19_05519 0.65 -1.1
227,060 - MPMX19_05519 0.65 -1.3
227,060 - MPMX19_05519 0.65 -1.1
227,060 - MPMX19_05519 0.65 -1.7
227,060 - MPMX19_05519 0.65 +0.8
227,060 - MPMX19_05519 0.65 -1.1
227,060 - MPMX19_05519 0.65 -0.3
227,060 - MPMX19_05519 0.65 -0.3
227,060 - MPMX19_05519 0.65 -2.1
227,060 - MPMX19_05519 0.65 -1.7
227,060 - MPMX19_05519 0.65 -1.1
227,207 - MPMX19_05519 0.76 -2.2
227,270 - MPMX19_05519 0.81 -1.3
227,270 - MPMX19_05519 0.81 -0.6
227,270 - MPMX19_05519 0.81 -0.1
227,270 - MPMX19_05519 0.81 +0.7
227,270 - MPMX19_05519 0.81 -0.9
227,270 - MPMX19_05519 0.81 -1.9
227,589 - -1.3
227,589 - +0.3
227,677 + +0.1
227,677 + -1.5
227,678 - -2.7
227,692 + -0.4
227,692 + -1.3
227,693 - -1.2
227,709 - -1.2
228,165 + MPMX19_05520 0.71 +0.7
228,165 + MPMX19_05520 0.71 -0.3
228,165 + MPMX19_05520 0.71 -2.1
228,166 - MPMX19_05520 0.71 +1.3
228,204 + MPMX19_05520 0.78 +1.7
228,204 + MPMX19_05520 0.78 -1.7
228,204 + MPMX19_05520 0.78 +0.7
228,204 + MPMX19_05520 0.78 -0.6
228,204 + MPMX19_05520 0.78 +0.0
228,204 + MPMX19_05520 0.78 -0.1
228,205 - MPMX19_05520 0.78 +0.4
228,205 - MPMX19_05520 0.78 -0.2
228,228 + MPMX19_05520 0.82 -0.1
228,228 + MPMX19_05520 0.82 -1.7
228,228 + MPMX19_05520 0.82 -1.3
228,228 + MPMX19_05520 0.82 -0.3
228,228 + MPMX19_05520 0.82 +1.3
228,228 + MPMX19_05520 0.82 -0.3
228,228 + MPMX19_05520 0.82 -0.3
228,229 - MPMX19_05520 0.82 -1.1
228,229 - MPMX19_05520 0.82 -1.1
228,229 - MPMX19_05520 0.82 +0.7
228,229 - MPMX19_05520 0.82 -1.0
228,229 - MPMX19_05520 0.82 +0.4
228,291 + -0.5
228,292 - -0.5
228,347 + -1.5
228,348 - -1.9
228,348 - -0.0
228,348 - +0.7
228,443 + -0.5
228,443 + -0.6
228,443 + -0.3
228,443 + -0.3
228,443 + -1.1
228,443 + -0.0
228,443 + -0.6
228,443 + -1.8
228,443 + -1.1
228,443 + -0.2
228,444 - +1.3
228,444 - -0.7
228,444 - +1.0
228,444 - +0.8
228,444 - -1.1
228,444 - +1.5

Or see this region's nucleotide sequence