Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05330 and MPMX19_05331 overlap by 4 nucleotides
MPMX19_05330: MPMX19_05330 - Tagatose-6-phosphate kinase, at 871,635 to 872,603
_05330
MPMX19_05331: MPMX19_05331 - hypothetical protein, at 872,600 to 875,140
_05331
Position (kb) 872
873
874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 871.695 kb on + strand at 872.134 kb on + strand, within MPMX19_05330 at 872.934 kb on + strand, within MPMX19_05331 at 872.934 kb on + strand, within MPMX19_05331 at 872.934 kb on + strand, within MPMX19_05331 at 872.935 kb on - strand, within MPMX19_05331 at 872.935 kb on - strand, within MPMX19_05331 at 872.935 kb on - strand, within MPMX19_05331 at 873.168 kb on + strand, within MPMX19_05331 at 873.169 kb on - strand, within MPMX19_05331 at 873.169 kb on - strand, within MPMX19_05331 at 873.351 kb on + strand, within MPMX19_05331 at 873.351 kb on + strand, within MPMX19_05331 at 873.351 kb on + strand, within MPMX19_05331 at 873.351 kb on + strand, within MPMX19_05331 at 873.352 kb on - strand, within MPMX19_05331 at 873.352 kb on - strand, within MPMX19_05331 at 873.352 kb on - strand, within MPMX19_05331 at 873.352 kb on - strand, within MPMX19_05331 at 873.352 kb on - strand, within MPMX19_05331 at 873.360 kb on + strand, within MPMX19_05331 at 873.360 kb on + strand, within MPMX19_05331 at 873.360 kb on + strand, within MPMX19_05331 at 873.361 kb on - strand, within MPMX19_05331 at 873.361 kb on - strand, within MPMX19_05331 at 873.361 kb on - strand, within MPMX19_05331 at 873.361 kb on - strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.618 kb on + strand, within MPMX19_05331 at 873.619 kb on - strand, within MPMX19_05331 at 873.619 kb on - strand, within MPMX19_05331 at 875.007 kb on + strand at 875.008 kb on - strand at 875.149 kb on + strand at 875.149 kb on + strand at 875.149 kb on + strand at 875.150 kb on - strand at 875.150 kb on - strand at 875.150 kb on - strand at 875.150 kb on - strand at 875.197 kb on + strand at 875.197 kb on + strand at 875.233 kb on + strand at 875.351 kb on + strand at 875.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 871,695 + -1.7 872,134 + MPMX19_05330 0.51 -0.1 872,934 + MPMX19_05331 0.13 -1.1 872,934 + MPMX19_05331 0.13 +3.1 872,934 + MPMX19_05331 0.13 +0.5 872,935 - MPMX19_05331 0.13 -0.5 872,935 - MPMX19_05331 0.13 -0.8 872,935 - MPMX19_05331 0.13 -0.7 873,168 + MPMX19_05331 0.22 -1.6 873,169 - MPMX19_05331 0.22 -0.3 873,169 - MPMX19_05331 0.22 +0.1 873,351 + MPMX19_05331 0.30 -0.7 873,351 + MPMX19_05331 0.30 +1.5 873,351 + MPMX19_05331 0.30 -0.4 873,351 + MPMX19_05331 0.30 -1.7 873,352 - MPMX19_05331 0.30 -2.0 873,352 - MPMX19_05331 0.30 -0.5 873,352 - MPMX19_05331 0.30 +0.6 873,352 - MPMX19_05331 0.30 -0.1 873,352 - MPMX19_05331 0.30 -0.5 873,360 + MPMX19_05331 0.30 -1.0 873,360 + MPMX19_05331 0.30 -0.1 873,360 + MPMX19_05331 0.30 +0.5 873,361 - MPMX19_05331 0.30 -0.1 873,361 - MPMX19_05331 0.30 -0.6 873,361 - MPMX19_05331 0.30 -2.0 873,361 - MPMX19_05331 0.30 -2.6 873,618 + MPMX19_05331 0.40 -2.1 873,618 + MPMX19_05331 0.40 -1.7 873,618 + MPMX19_05331 0.40 -0.5 873,618 + MPMX19_05331 0.40 -1.0 873,618 + MPMX19_05331 0.40 -0.8 873,618 + MPMX19_05331 0.40 +0.3 873,618 + MPMX19_05331 0.40 -1.0 873,618 + MPMX19_05331 0.40 -0.2 873,619 - MPMX19_05331 0.40 -2.1 873,619 - MPMX19_05331 0.40 -0.5 875,007 + -2.9 875,008 - -1.5 875,149 + -1.1 875,149 + +0.0 875,149 + +0.5 875,150 - +0.9 875,150 - +0.2 875,150 - -0.8 875,150 - +0.8 875,197 + -1.9 875,197 + +0.0 875,233 + -0.8 875,351 + -0.2 875,351 + -0.1
Or see this region's nucleotide sequence