Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05152

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05151 and MPMX19_05152 are separated by 29 nucleotidesMPMX19_05152 and MPMX19_05153 are separated by 32 nucleotides MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364 _05151 MPMX19_05152: MPMX19_05152 - Phosphonoacetaldehyde hydrolase, at 649,394 to 650,224 _05152 MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483 _05153 Position (kb) 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2at 648.519 kb on + strand, within MPMX19_05151at 648.519 kb on + strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.195 kb on - strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.228 kb on - strand, within MPMX19_05151at 649.406 kb on + strandat 649.407 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.848 kb on - strand, within MPMX19_05152at 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.467 kb on + strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.468 kb on - strand, within MPMX19_05153at 650.538 kb on + strand, within MPMX19_05153at 650.538 kb on + strand, within MPMX19_05153at 650.539 kb on - strand, within MPMX19_05153at 650.539 kb on - strand, within MPMX19_05153at 650.935 kb on + strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 650.936 kb on - strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.010 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.208 kb on + strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153at 651.209 kb on - strand, within MPMX19_05153

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
648,519 + MPMX19_05151 0.24 -0.8
648,519 + MPMX19_05151 0.24 -0.5
648,520 - MPMX19_05151 0.24 +0.9
648,520 - MPMX19_05151 0.24 -1.8
649,194 + MPMX19_05151 0.85 -0.9
649,194 + MPMX19_05151 0.85 -0.5
649,194 + MPMX19_05151 0.85 +0.2
649,194 + MPMX19_05151 0.85 -1.1
649,194 + MPMX19_05151 0.85 -0.8
649,195 - MPMX19_05151 0.85 +0.5
649,227 + MPMX19_05151 0.88 +1.0
649,227 + MPMX19_05151 0.88 +0.5
649,227 + MPMX19_05151 0.88 -1.8
649,227 + MPMX19_05151 0.88 +0.5
649,227 + MPMX19_05151 0.88 -1.9
649,227 + MPMX19_05151 0.88 +0.3
649,227 + MPMX19_05151 0.88 -1.7
649,228 - MPMX19_05151 0.88 -1.8
649,406 + -1.7
649,407 - -0.1
649,419 - -0.8
649,419 - -2.2
649,419 - +0.5
649,419 - -0.4
649,673 + MPMX19_05152 0.34 -0.1
649,673 + MPMX19_05152 0.34 -0.1
649,673 + MPMX19_05152 0.34 -2.5
649,673 + MPMX19_05152 0.34 -0.4
649,673 + MPMX19_05152 0.34 -1.3
649,673 + MPMX19_05152 0.34 -0.5
649,674 - MPMX19_05152 0.34 -1.3
649,674 - MPMX19_05152 0.34 -0.1
649,674 - MPMX19_05152 0.34 -1.3
649,848 - MPMX19_05152 0.55 -1.1
650,144 + +0.2
650,144 + -0.1
650,144 + -1.7
650,144 + -0.3
650,144 + +0.9
650,145 - -1.3
650,145 - -0.6
650,145 - -1.1
650,145 - -1.8
650,145 - -0.1
650,145 - +1.1
650,145 - +0.0
650,145 - +0.7
650,467 + MPMX19_05153 0.17 -1.1
650,467 + MPMX19_05153 0.17 -1.3
650,467 + MPMX19_05153 0.17 -0.3
650,467 + MPMX19_05153 0.17 +0.5
650,467 + MPMX19_05153 0.17 -0.8
650,467 + MPMX19_05153 0.17 +0.2
650,467 + MPMX19_05153 0.17 -1.5
650,467 + MPMX19_05153 0.17 +1.2
650,467 + MPMX19_05153 0.17 +2.5
650,467 + MPMX19_05153 0.17 +0.9
650,467 + MPMX19_05153 0.17 -0.5
650,467 + MPMX19_05153 0.17 -1.2
650,468 - MPMX19_05153 0.17 -1.1
650,468 - MPMX19_05153 0.17 -1.1
650,468 - MPMX19_05153 0.17 -0.2
650,468 - MPMX19_05153 0.17 -1.5
650,468 - MPMX19_05153 0.17 -0.1
650,468 - MPMX19_05153 0.17 -0.5
650,468 - MPMX19_05153 0.17 +0.2
650,468 - MPMX19_05153 0.17 +2.5
650,468 - MPMX19_05153 0.17 +0.1
650,468 - MPMX19_05153 0.17 -0.1
650,538 + MPMX19_05153 0.23 -0.5
650,538 + MPMX19_05153 0.23 -0.5
650,539 - MPMX19_05153 0.23 -0.7
650,539 - MPMX19_05153 0.23 +1.5
650,935 + MPMX19_05153 0.55 -1.3
650,936 - MPMX19_05153 0.55 -2.1
650,936 - MPMX19_05153 0.55 -2.0
650,936 - MPMX19_05153 0.55 -0.3
651,010 + MPMX19_05153 0.61 -0.3
651,010 + MPMX19_05153 0.61 +1.0
651,010 + MPMX19_05153 0.61 -1.1
651,010 + MPMX19_05153 0.61 -0.3
651,208 + MPMX19_05153 0.78 -0.1
651,208 + MPMX19_05153 0.78 +0.6
651,208 + MPMX19_05153 0.78 -1.7
651,208 + MPMX19_05153 0.78 +0.7
651,208 + MPMX19_05153 0.78 -0.1
651,208 + MPMX19_05153 0.78 -0.2
651,208 + MPMX19_05153 0.78 -1.1
651,208 + MPMX19_05153 0.78 +0.1
651,208 + MPMX19_05153 0.78 +1.8
651,208 + MPMX19_05153 0.78 +0.3
651,209 - MPMX19_05153 0.78 +0.2
651,209 - MPMX19_05153 0.78 -0.8
651,209 - MPMX19_05153 0.78 -0.7
651,209 - MPMX19_05153 0.78 +1.3
651,209 - MPMX19_05153 0.78 -0.1
651,209 - MPMX19_05153 0.78 +0.1
651,209 - MPMX19_05153 0.78 -2.6
651,209 - MPMX19_05153 0.78 -1.1
651,209 - MPMX19_05153 0.78 +0.5
651,209 - MPMX19_05153 0.78 -0.5
651,209 - MPMX19_05153 0.78 -1.2
651,209 - MPMX19_05153 0.78 +0.8

Or see this region's nucleotide sequence