Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05107

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05105 and MPMX19_05106 overlap by 4 nucleotidesMPMX19_05106 and MPMX19_05107 overlap by 4 nucleotidesMPMX19_05107 and MPMX19_05108 are separated by 9 nucleotides MPMX19_05105: MPMX19_05105 - Glycine betaine uptake system permease protein YehW, at 592,239 to 592,997 _05105 MPMX19_05106: MPMX19_05106 - Glycine betaine uptake system ATP-binding protein YehX, at 592,994 to 593,953 _05106 MPMX19_05107: MPMX19_05107 - Glycine betaine uptake system permease protein YehY, at 593,950 to 595,134 _05107 MPMX19_05108: MPMX19_05108 - Glycine betaine-binding protein YehZ, at 595,144 to 596,076 _05108 Position (kb) 593 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 593.559 kb on + strand, within MPMX19_05106at 593.559 kb on + strand, within MPMX19_05106at 593.560 kb on - strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.718 kb on + strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 593.719 kb on - strand, within MPMX19_05106at 594.319 kb on + strand, within MPMX19_05107at 594.319 kb on + strand, within MPMX19_05107at 594.319 kb on + strand, within MPMX19_05107at 594.320 kb on - strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.335 kb on + strand, within MPMX19_05107at 594.336 kb on - strand, within MPMX19_05107at 594.336 kb on - strand, within MPMX19_05107at 594.623 kb on + strand, within MPMX19_05107at 594.623 kb on + strand, within MPMX19_05107at 594.624 kb on - strand, within MPMX19_05107at 594.708 kb on + strand, within MPMX19_05107at 594.709 kb on - strand, within MPMX19_05107at 594.709 kb on - strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.946 kb on + strand, within MPMX19_05107at 594.947 kb on - strand, within MPMX19_05107at 594.947 kb on - strand, within MPMX19_05107at 595.145 kb on + strandat 595.145 kb on + strandat 595.145 kb on + strandat 595.145 kb on + strandat 595.146 kb on - strandat 595.146 kb on - strandat 595.172 kb on + strandat 595.172 kb on + strandat 595.173 kb on - strandat 595.173 kb on - strandat 595.173 kb on - strandat 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.334 kb on + strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.335 kb on - strand, within MPMX19_05108at 595.406 kb on + strand, within MPMX19_05108at 595.406 kb on + strand, within MPMX19_05108at 595.406 kb on + strand, within MPMX19_05108at 595.406 kb on + strand, within MPMX19_05108at 595.407 kb on - strand, within MPMX19_05108at 595.407 kb on - strand, within MPMX19_05108at 595.407 kb on - strand, within MPMX19_05108at 595.407 kb on - strand, within MPMX19_05108at 595.517 kb on + strand, within MPMX19_05108at 595.517 kb on + strand, within MPMX19_05108at 595.517 kb on + strand, within MPMX19_05108at 595.517 kb on + strand, within MPMX19_05108at 595.518 kb on - strand, within MPMX19_05108at 595.518 kb on - strand, within MPMX19_05108at 595.518 kb on - strand, within MPMX19_05108at 595.748 kb on + strand, within MPMX19_05108at 595.749 kb on - strand, within MPMX19_05108at 595.749 kb on - strand, within MPMX19_05108at 595.749 kb on - strand, within MPMX19_05108at 595.749 kb on - strand, within MPMX19_05108at 595.817 kb on + strand, within MPMX19_05108at 595.817 kb on + strand, within MPMX19_05108at 595.817 kb on + strand, within MPMX19_05108at 595.817 kb on + strand, within MPMX19_05108at 595.817 kb on + strand, within MPMX19_05108at 595.818 kb on - strand, within MPMX19_05108at 595.818 kb on - strand, within MPMX19_05108at 595.818 kb on - strand, within MPMX19_05108at 595.818 kb on - strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.826 kb on + strand, within MPMX19_05108at 595.827 kb on - strand, within MPMX19_05108at 595.827 kb on - strand, within MPMX19_05108at 595.827 kb on - strand, within MPMX19_05108at 595.827 kb on - strand, within MPMX19_05108at 595.827 kb on - strand, within MPMX19_05108at 595.890 kb on + strand, within MPMX19_05108at 595.891 kb on - strand, within MPMX19_05108at 595.891 kb on - strand, within MPMX19_05108at 595.891 kb on - strand, within MPMX19_05108at 595.891 kb on - strand, within MPMX19_05108at 595.891 kb on - strand, within MPMX19_05108at 596.043 kb on + strandat 596.043 kb on + strandat 596.043 kb on + strandat 596.043 kb on + strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.044 kb on - strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.045 kb on + strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.046 kb on - strandat 596.129 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
593,559 + MPMX19_05106 0.59 -1.7
593,559 + MPMX19_05106 0.59 -2.1
593,560 - MPMX19_05106 0.59 -0.9
593,718 + MPMX19_05106 0.75 -0.2
593,718 + MPMX19_05106 0.75 -1.1
593,718 + MPMX19_05106 0.75 -0.3
593,718 + MPMX19_05106 0.75 +1.0
593,718 + MPMX19_05106 0.75 -0.5
593,718 + MPMX19_05106 0.75 +0.9
593,719 - MPMX19_05106 0.76 -0.5
593,719 - MPMX19_05106 0.76 -0.1
593,719 - MPMX19_05106 0.76 +2.5
593,719 - MPMX19_05106 0.76 -0.5
593,719 - MPMX19_05106 0.76 -1.5
594,319 + MPMX19_05107 0.31 -2.4
594,319 + MPMX19_05107 0.31 -1.1
594,319 + MPMX19_05107 0.31 -1.5
594,320 - MPMX19_05107 0.31 -2.0
594,335 + MPMX19_05107 0.32 -1.1
594,335 + MPMX19_05107 0.32 -1.3
594,335 + MPMX19_05107 0.32 -3.0
594,335 + MPMX19_05107 0.32 -1.8
594,336 - MPMX19_05107 0.33 -0.7
594,336 - MPMX19_05107 0.33 -0.8
594,623 + MPMX19_05107 0.57 -0.8
594,623 + MPMX19_05107 0.57 -0.5
594,624 - MPMX19_05107 0.57 -0.5
594,708 + MPMX19_05107 0.64 -0.8
594,709 - MPMX19_05107 0.64 -0.8
594,709 - MPMX19_05107 0.64 +1.5
594,946 + MPMX19_05107 0.84 -1.5
594,946 + MPMX19_05107 0.84 -1.7
594,946 + MPMX19_05107 0.84 +0.2
594,946 + MPMX19_05107 0.84 -2.2
594,947 - MPMX19_05107 0.84 -0.8
594,947 - MPMX19_05107 0.84 -0.7
595,145 + -1.5
595,145 + -0.8
595,145 + -0.6
595,145 + -0.5
595,146 - +1.5
595,146 - +0.0
595,172 + -0.9
595,172 + -0.2
595,173 - -2.1
595,173 - -0.1
595,173 - -1.7
595,334 + MPMX19_05108 0.20 -1.1
595,334 + MPMX19_05108 0.20 -0.4
595,334 + MPMX19_05108 0.20 +0.5
595,334 + MPMX19_05108 0.20 +0.7
595,334 + MPMX19_05108 0.20 -0.5
595,334 + MPMX19_05108 0.20 -0.1
595,334 + MPMX19_05108 0.20 -2.7
595,334 + MPMX19_05108 0.20 -0.5
595,334 + MPMX19_05108 0.20 -0.7
595,334 + MPMX19_05108 0.20 +0.9
595,334 + MPMX19_05108 0.20 -1.8
595,334 + MPMX19_05108 0.20 -0.8
595,334 + MPMX19_05108 0.20 +1.0
595,334 + MPMX19_05108 0.20 -0.3
595,334 + MPMX19_05108 0.20 +1.5
595,334 + MPMX19_05108 0.20 -0.5
595,334 + MPMX19_05108 0.20 +0.3
595,334 + MPMX19_05108 0.20 +0.9
595,334 + MPMX19_05108 0.20 +0.9
595,334 + MPMX19_05108 0.20 -2.0
595,334 + MPMX19_05108 0.20 -0.9
595,334 + MPMX19_05108 0.20 -0.8
595,334 + MPMX19_05108 0.20 +0.3
595,334 + MPMX19_05108 0.20 -1.1
595,334 + MPMX19_05108 0.20 +0.8
595,335 - MPMX19_05108 0.20 -0.8
595,335 - MPMX19_05108 0.20 -1.8
595,335 - MPMX19_05108 0.20 -0.7
595,335 - MPMX19_05108 0.20 -0.6
595,335 - MPMX19_05108 0.20 -1.4
595,335 - MPMX19_05108 0.20 -0.6
595,335 - MPMX19_05108 0.20 -0.2
595,335 - MPMX19_05108 0.20 -0.3
595,335 - MPMX19_05108 0.20 -1.1
595,335 - MPMX19_05108 0.20 -0.5
595,335 - MPMX19_05108 0.20 +0.6
595,335 - MPMX19_05108 0.20 -1.1
595,335 - MPMX19_05108 0.20 +0.5
595,335 - MPMX19_05108 0.20 -3.0
595,335 - MPMX19_05108 0.20 +0.2
595,335 - MPMX19_05108 0.20 +0.5
595,335 - MPMX19_05108 0.20 -1.8
595,335 - MPMX19_05108 0.20 -1.2
595,335 - MPMX19_05108 0.20 -1.1
595,335 - MPMX19_05108 0.20 -0.1
595,335 - MPMX19_05108 0.20 -0.7
595,335 - MPMX19_05108 0.20 -1.2
595,335 - MPMX19_05108 0.20 -2.7
595,335 - MPMX19_05108 0.20 +0.9
595,335 - MPMX19_05108 0.20 -1.4
595,335 - MPMX19_05108 0.20 -1.3
595,335 - MPMX19_05108 0.20 -0.1
595,406 + MPMX19_05108 0.28 -0.7
595,406 + MPMX19_05108 0.28 +1.8
595,406 + MPMX19_05108 0.28 -0.1
595,406 + MPMX19_05108 0.28 -1.4
595,407 - MPMX19_05108 0.28 +1.5
595,407 - MPMX19_05108 0.28 -0.6
595,407 - MPMX19_05108 0.28 -0.8
595,407 - MPMX19_05108 0.28 -0.1
595,517 + MPMX19_05108 0.40 -0.8
595,517 + MPMX19_05108 0.40 -0.1
595,517 + MPMX19_05108 0.40 -1.5
595,517 + MPMX19_05108 0.40 -0.3
595,518 - MPMX19_05108 0.40 -1.5
595,518 - MPMX19_05108 0.40 +0.1
595,518 - MPMX19_05108 0.40 +0.1
595,748 + MPMX19_05108 0.65 +0.1
595,749 - MPMX19_05108 0.65 -0.8
595,749 - MPMX19_05108 0.65 -1.5
595,749 - MPMX19_05108 0.65 -1.8
595,749 - MPMX19_05108 0.65 +0.2
595,817 + MPMX19_05108 0.72 -1.8
595,817 + MPMX19_05108 0.72 -1.1
595,817 + MPMX19_05108 0.72 -1.7
595,817 + MPMX19_05108 0.72 +0.9
595,817 + MPMX19_05108 0.72 -1.6
595,818 - MPMX19_05108 0.72 +1.1
595,818 - MPMX19_05108 0.72 +0.2
595,818 - MPMX19_05108 0.72 +0.4
595,818 - MPMX19_05108 0.72 +0.5
595,826 + MPMX19_05108 0.73 -1.1
595,826 + MPMX19_05108 0.73 -0.3
595,826 + MPMX19_05108 0.73 +0.2
595,826 + MPMX19_05108 0.73 -0.8
595,826 + MPMX19_05108 0.73 -0.8
595,826 + MPMX19_05108 0.73 -0.5
595,826 + MPMX19_05108 0.73 +0.5
595,826 + MPMX19_05108 0.73 -0.2
595,827 - MPMX19_05108 0.73 -0.8
595,827 - MPMX19_05108 0.73 -1.2
595,827 - MPMX19_05108 0.73 +1.5
595,827 - MPMX19_05108 0.73 -1.6
595,827 - MPMX19_05108 0.73 -0.7
595,890 + MPMX19_05108 0.80 +0.2
595,891 - MPMX19_05108 0.80 +1.5
595,891 - MPMX19_05108 0.80 +0.5
595,891 - MPMX19_05108 0.80 -0.7
595,891 - MPMX19_05108 0.80 -0.2
595,891 - MPMX19_05108 0.80 -1.1
596,043 + +1.9
596,043 + +0.3
596,043 + +1.0
596,043 + +1.5
596,044 - -2.7
596,044 - -1.1
596,044 - +0.3
596,044 - -1.1
596,044 - -0.8
596,044 - -1.6
596,044 - -0.3
596,044 - -1.7
596,044 - -1.8
596,044 - -1.1
596,044 - -1.0
596,045 + -1.5
596,045 + -1.1
596,045 + -0.3
596,045 + +1.8
596,045 + -1.7
596,045 + +1.9
596,045 + -0.9
596,045 + -0.5
596,045 + -0.5
596,045 + +1.2
596,045 + +0.7
596,045 + +0.5
596,045 + -1.9
596,045 + +1.2
596,045 + +0.1
596,045 + -1.1
596,046 - -2.5
596,046 - -0.1
596,046 - -0.1
596,046 - -1.0
596,046 - +0.1
596,046 - -1.4
596,046 - +1.5
596,046 - -1.0
596,046 - -0.6
596,046 - -0.3
596,046 - -1.7
596,046 - -0.3
596,046 - -0.4
596,046 - +0.0
596,046 - -0.8
596,046 - -0.4
596,129 + -1.5

Or see this region's nucleotide sequence