Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04988

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04986 and MPMX19_04987 are separated by 41 nucleotidesMPMX19_04987 and MPMX19_04988 are separated by 28 nucleotidesMPMX19_04988 and MPMX19_04989 are separated by 23 nucleotides MPMX19_04986: MPMX19_04986 - hypothetical protein, at 463,329 to 463,973 _04986 MPMX19_04987: MPMX19_04987 - hypothetical protein, at 464,015 to 464,938 _04987 MPMX19_04988: MPMX19_04988 - hypothetical protein, at 464,967 to 465,848 _04988 MPMX19_04989: MPMX19_04989 - K(+)/H(+) antiporter NhaP2, at 465,872 to 468,451 _04989 Position (kb) 464 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 464.268 kb on + strand, within MPMX19_04987at 464.268 kb on + strand, within MPMX19_04987at 464.268 kb on + strand, within MPMX19_04987at 464.269 kb on - strand, within MPMX19_04987at 464.269 kb on - strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.300 kb on + strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.301 kb on - strand, within MPMX19_04987at 464.324 kb on + strand, within MPMX19_04987at 464.325 kb on - strand, within MPMX19_04987at 464.325 kb on - strand, within MPMX19_04987at 464.325 kb on - strand, within MPMX19_04987at 464.325 kb on - strand, within MPMX19_04987at 464.327 kb on + strand, within MPMX19_04987at 464.327 kb on + strand, within MPMX19_04987at 464.328 kb on - strand, within MPMX19_04987at 464.328 kb on - strand, within MPMX19_04987at 464.328 kb on - strand, within MPMX19_04987at 464.328 kb on - strand, within MPMX19_04987at 464.328 kb on - strand, within MPMX19_04987at 464.574 kb on - strand, within MPMX19_04987at 464.789 kb on + strand, within MPMX19_04987at 464.789 kb on + strand, within MPMX19_04987at 464.789 kb on + strand, within MPMX19_04987at 464.789 kb on + strand, within MPMX19_04987at 464.790 kb on - strand, within MPMX19_04987at 464.790 kb on - strand, within MPMX19_04987at 465.088 kb on + strand, within MPMX19_04988at 465.088 kb on + strand, within MPMX19_04988at 465.088 kb on + strand, within MPMX19_04988at 465.088 kb on + strand, within MPMX19_04988at 465.088 kb on + strand, within MPMX19_04988at 465.089 kb on - strand, within MPMX19_04988at 465.089 kb on - strand, within MPMX19_04988at 465.089 kb on - strand, within MPMX19_04988at 465.089 kb on - strand, within MPMX19_04988at 465.271 kb on + strand, within MPMX19_04988at 465.271 kb on + strand, within MPMX19_04988at 465.271 kb on + strand, within MPMX19_04988at 465.271 kb on + strand, within MPMX19_04988at 465.271 kb on + strand, within MPMX19_04988at 465.272 kb on - strand, within MPMX19_04988at 465.272 kb on - strand, within MPMX19_04988at 465.272 kb on - strand, within MPMX19_04988at 465.272 kb on - strand, within MPMX19_04988at 465.272 kb on - strand, within MPMX19_04988at 465.326 kb on - strand, within MPMX19_04988at 465.326 kb on - strand, within MPMX19_04988at 465.326 kb on - strand, within MPMX19_04988at 465.326 kb on - strand, within MPMX19_04988at 465.368 kb on - strand, within MPMX19_04988at 465.587 kb on + strand, within MPMX19_04988at 465.588 kb on - strand, within MPMX19_04988at 465.588 kb on - strand, within MPMX19_04988at 465.592 kb on + strand, within MPMX19_04988at 465.592 kb on + strand, within MPMX19_04988at 465.592 kb on + strand, within MPMX19_04988at 465.592 kb on + strand, within MPMX19_04988at 465.592 kb on + strand, within MPMX19_04988at 465.592 kb on + strand, within MPMX19_04988at 465.593 kb on - strand, within MPMX19_04988at 465.593 kb on - strand, within MPMX19_04988at 465.593 kb on - strand, within MPMX19_04988at 465.593 kb on - strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.742 kb on + strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.743 kb on - strand, within MPMX19_04988at 465.754 kb on + strand, within MPMX19_04988at 465.755 kb on - strand, within MPMX19_04988at 465.755 kb on - strand, within MPMX19_04988at 465.755 kb on - strand, within MPMX19_04988at 466.014 kb on + strandat 466.014 kb on + strandat 466.014 kb on + strandat 466.014 kb on + strandat 466.015 kb on - strandat 466.015 kb on - strandat 466.414 kb on - strand, within MPMX19_04989at 466.452 kb on + strand, within MPMX19_04989at 466.452 kb on + strand, within MPMX19_04989at 466.453 kb on - strand, within MPMX19_04989at 466.453 kb on - strand, within MPMX19_04989at 466.453 kb on - strand, within MPMX19_04989at 466.453 kb on - strand, within MPMX19_04989at 466.477 kb on - strand, within MPMX19_04989at 466.477 kb on - strand, within MPMX19_04989at 466.485 kb on + strand, within MPMX19_04989at 466.486 kb on - strand, within MPMX19_04989at 466.765 kb on - strand, within MPMX19_04989

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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464,268 + MPMX19_04987 0.27 -0.2
464,268 + MPMX19_04987 0.27 +1.0
464,268 + MPMX19_04987 0.27 +2.3
464,269 - MPMX19_04987 0.27 +1.1
464,269 - MPMX19_04987 0.27 -2.1
464,300 + MPMX19_04987 0.31 -1.3
464,300 + MPMX19_04987 0.31 -1.3
464,300 + MPMX19_04987 0.31 -1.0
464,300 + MPMX19_04987 0.31 -0.3
464,300 + MPMX19_04987 0.31 -0.8
464,300 + MPMX19_04987 0.31 -1.9
464,300 + MPMX19_04987 0.31 -1.6
464,300 + MPMX19_04987 0.31 +0.1
464,300 + MPMX19_04987 0.31 -0.5
464,300 + MPMX19_04987 0.31 +0.5
464,300 + MPMX19_04987 0.31 +0.4
464,300 + MPMX19_04987 0.31 -0.0
464,300 + MPMX19_04987 0.31 -0.5
464,300 + MPMX19_04987 0.31 -1.0
464,300 + MPMX19_04987 0.31 -0.2
464,300 + MPMX19_04987 0.31 -0.0
464,300 + MPMX19_04987 0.31 -0.8
464,300 + MPMX19_04987 0.31 +0.5
464,300 + MPMX19_04987 0.31 -0.4
464,300 + MPMX19_04987 0.31 -0.5
464,300 + MPMX19_04987 0.31 +0.5
464,300 + MPMX19_04987 0.31 +0.4
464,300 + MPMX19_04987 0.31 -0.5
464,300 + MPMX19_04987 0.31 -0.4
464,300 + MPMX19_04987 0.31 -1.3
464,300 + MPMX19_04987 0.31 -0.0
464,300 + MPMX19_04987 0.31 -1.0
464,300 + MPMX19_04987 0.31 -1.0
464,300 + MPMX19_04987 0.31 -1.3
464,300 + MPMX19_04987 0.31 +0.5
464,300 + MPMX19_04987 0.31 -1.4
464,300 + MPMX19_04987 0.31 -0.0
464,301 - MPMX19_04987 0.31 -2.0
464,301 - MPMX19_04987 0.31 +0.5
464,301 - MPMX19_04987 0.31 -0.6
464,301 - MPMX19_04987 0.31 -3.0
464,301 - MPMX19_04987 0.31 -0.6
464,301 - MPMX19_04987 0.31 +0.1
464,301 - MPMX19_04987 0.31 -0.6
464,301 - MPMX19_04987 0.31 -1.3
464,301 - MPMX19_04987 0.31 -0.0
464,301 - MPMX19_04987 0.31 -1.2
464,301 - MPMX19_04987 0.31 +2.1
464,301 - MPMX19_04987 0.31 -0.0
464,301 - MPMX19_04987 0.31 +0.8
464,301 - MPMX19_04987 0.31 -0.0
464,301 - MPMX19_04987 0.31 -1.3
464,301 - MPMX19_04987 0.31 -0.8
464,301 - MPMX19_04987 0.31 -0.5
464,301 - MPMX19_04987 0.31 -0.8
464,301 - MPMX19_04987 0.31 +1.0
464,301 - MPMX19_04987 0.31 -1.0
464,301 - MPMX19_04987 0.31 -0.0
464,301 - MPMX19_04987 0.31 +0.1
464,301 - MPMX19_04987 0.31 +1.0
464,324 + MPMX19_04987 0.33 -0.0
464,325 - MPMX19_04987 0.34 -0.6
464,325 - MPMX19_04987 0.34 +1.1
464,325 - MPMX19_04987 0.34 -0.3
464,325 - MPMX19_04987 0.34 +1.5
464,327 + MPMX19_04987 0.34 -0.8
464,327 + MPMX19_04987 0.34 -1.3
464,328 - MPMX19_04987 0.34 -1.4
464,328 - MPMX19_04987 0.34 -0.8
464,328 - MPMX19_04987 0.34 +0.1
464,328 - MPMX19_04987 0.34 +0.5
464,328 - MPMX19_04987 0.34 -0.0
464,574 - MPMX19_04987 0.60 -1.3
464,789 + MPMX19_04987 0.84 -1.2
464,789 + MPMX19_04987 0.84 -0.0
464,789 + MPMX19_04987 0.84 -1.9
464,789 + MPMX19_04987 0.84 +1.5
464,790 - MPMX19_04987 0.84 -1.5
464,790 - MPMX19_04987 0.84 -0.5
465,088 + MPMX19_04988 0.14 -0.1
465,088 + MPMX19_04988 0.14 +0.5
465,088 + MPMX19_04988 0.14 +0.4
465,088 + MPMX19_04988 0.14 +0.5
465,088 + MPMX19_04988 0.14 +1.5
465,089 - MPMX19_04988 0.14 -1.0
465,089 - MPMX19_04988 0.14 -1.9
465,089 - MPMX19_04988 0.14 +1.1
465,089 - MPMX19_04988 0.14 +0.2
465,271 + MPMX19_04988 0.34 -1.0
465,271 + MPMX19_04988 0.34 -1.6
465,271 + MPMX19_04988 0.34 -1.5
465,271 + MPMX19_04988 0.34 -0.8
465,271 + MPMX19_04988 0.34 -0.4
465,272 - MPMX19_04988 0.35 -0.2
465,272 - MPMX19_04988 0.35 +1.2
465,272 - MPMX19_04988 0.35 -1.0
465,272 - MPMX19_04988 0.35 -1.3
465,272 - MPMX19_04988 0.35 -0.5
465,326 - MPMX19_04988 0.41 -0.5
465,326 - MPMX19_04988 0.41 +0.5
465,326 - MPMX19_04988 0.41 -0.5
465,326 - MPMX19_04988 0.41 -0.4
465,368 - MPMX19_04988 0.45 -2.0
465,587 + MPMX19_04988 0.70 +0.1
465,588 - MPMX19_04988 0.70 -0.8
465,588 - MPMX19_04988 0.70 +0.1
465,592 + MPMX19_04988 0.71 -2.5
465,592 + MPMX19_04988 0.71 +0.5
465,592 + MPMX19_04988 0.71 -0.5
465,592 + MPMX19_04988 0.71 -0.3
465,592 + MPMX19_04988 0.71 -1.0
465,592 + MPMX19_04988 0.71 -0.0
465,593 - MPMX19_04988 0.71 +0.2
465,593 - MPMX19_04988 0.71 -0.2
465,593 - MPMX19_04988 0.71 -1.0
465,593 - MPMX19_04988 0.71 +0.2
465,742 + MPMX19_04988 0.88 -0.8
465,742 + MPMX19_04988 0.88 -0.4
465,742 + MPMX19_04988 0.88 -0.2
465,742 + MPMX19_04988 0.88 -0.4
465,742 + MPMX19_04988 0.88 -1.0
465,742 + MPMX19_04988 0.88 -0.0
465,742 + MPMX19_04988 0.88 +1.9
465,742 + MPMX19_04988 0.88 -0.1
465,743 - MPMX19_04988 0.88 -0.8
465,743 - MPMX19_04988 0.88 -1.4
465,743 - MPMX19_04988 0.88 -0.5
465,743 - MPMX19_04988 0.88 -0.3
465,743 - MPMX19_04988 0.88 +1.5
465,743 - MPMX19_04988 0.88 -0.0
465,743 - MPMX19_04988 0.88 -0.6
465,754 + MPMX19_04988 0.89 -0.8
465,755 - MPMX19_04988 0.89 -1.3
465,755 - MPMX19_04988 0.89 -0.0
465,755 - MPMX19_04988 0.89 +1.2
466,014 + +0.7
466,014 + -2.6
466,014 + -1.2
466,014 + -1.3
466,015 - -0.0
466,015 - +0.7
466,414 - MPMX19_04989 0.21 -1.1
466,452 + MPMX19_04989 0.22 -0.5
466,452 + MPMX19_04989 0.22 -0.5
466,453 - MPMX19_04989 0.23 -0.8
466,453 - MPMX19_04989 0.23 -1.2
466,453 - MPMX19_04989 0.23 -0.6
466,453 - MPMX19_04989 0.23 -0.1
466,477 - MPMX19_04989 0.23 -2.4
466,477 - MPMX19_04989 0.23 -0.4
466,485 + MPMX19_04989 0.24 +0.5
466,486 - MPMX19_04989 0.24 +0.9
466,765 - MPMX19_04989 0.35 +0.1

Or see this region's nucleotide sequence